LOCUS CCD73657.1 979 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans AP-3 complex subunit delta domain-
containing protein protein.
ACCESSION BX284602-1286
PROTEIN_ID CCD73657.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="apd-3"
/locus_tag="CELE_W09G10.4"
/standard_name="W09G10.4b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00000162"
/db_xref="EnsemblGenomes-Tr:W09G10.4b"
/db_xref="GOA:Q95X88"
/db_xref="InterPro:IPR002553"
/db_xref="InterPro:IPR011989"
/db_xref="InterPro:IPR016024"
/db_xref="InterPro:IPR017105"
/db_xref="UniProtKB/TrEMBL:Q95X88"
/db_xref="WormBase:WBGene00000162"
intron_pos 14:1 (1/9)
intron_pos 168:0 (2/9)
intron_pos 223:2 (3/9)
intron_pos 444:0 (4/9)
intron_pos 567:0 (5/9)
intron_pos 697:0 (6/9)
intron_pos 809:0 (7/9)
intron_pos 851:0 (8/9)
intron_pos 950:0 (9/9)
BEGIN
1 MSLLYECINT VIAVLISISA GGDHTASIQL CVQKLGVLIE DSDQNLKYLG LLAMGKILKT
61 HPKAVQAHKD IVLRCLDDKD ESIRIRSLDL LYGMVSKKNI VEIVKKLMEH VEAAEGSHYR
121 DELLSRIIGI CSWSNYQYIT NFEWYISVLV ELTKVEGTEH GAKIAEQIQD VTVRVESIRH
181 FSVSQMALLV ENAHVLLAGS AQQRSNMCEV LLAAAWICGE YSQHVRNQQG VLESMLKAKP
241 SVMPGHILSV YVQNIGKLYC SLMSQAEEED DWDAIDSLDN LMLSKLPQFE LSEHLEAQER
301 ACNLMAIIRI VEKLHQDRQK MGSEVQKLYD GELNPVATKA QRKVPVPDGL DLDAWIGEEW
361 AAASEDESDD ESDIEEMFGA PATRPKMLEN EEQEPVVQDL EELGGGKKKK GKNGAEIAMS
421 KEEIEKRRKL REQEIENNPY YVKGSATAPK RPTRFGNPLE RVEIVEKEKE IQSPLEIPGV
481 VGLHRYMEQQ DSTLSWKKAK EDDIIGGGKK KKSTKKDGKK NGKKSGKKRR TTSTSSEEED
541 RIVHKVNRND GEMPEGAKST DDEDEKITSI DEFRALDMDL DAPLRPDEIV KAPQAYTRVY
601 PSQQKQGPLV PRPPTTFEPR LVAQQQEPAV KLVKEKKKKT GKKTTTATAV AKLKKKKSLP
661 ESSASKSNLF NMDDWLDGSN GNVPIDSTLE MKSTLNVEKP KKLKKSAISS KKKVREAYEE
721 TSGVCTPSIP HQPSPIDSEA ATSSEYCRLA ANKTIYVDFV ARPNCDPLDH GRLTVHLRVS
781 RKEHKEKIRK IELNMVDTLN AKVLKESEDP ILLAEELDSD ATSSEASFDV QVTATNVSRT
841 MRGTLTYFLV DDEGTRDDKL DLRLPIPATV FVMPNSSIRK DDYSALLASD DVDFGATQNV
901 ATGEVKLKTV LTQIVRKAHF SIVEETPKAA SLFGRTVGGE PICLLVKKTS DGVQIDGKAG
961 DEQLIQSIIQ DVSEICARA
//