LOCUS       CCD73645.1               655 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans yeast PRP (splicing factor) related protein.
ACCESSION   BX284602-199
PROTEIN_ID  CCD73645.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 15279421)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 15279421)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 15279421)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="II"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="prp-21"
                     /locus_tag="CELE_W07E6.4"
                     /standard_name="W07E6.4"
                     /note="Product from WormBase gene class prp"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00004188"
                     /db_xref="EnsemblGenomes-Tr:W07E6.4"
                     /db_xref="GOA:G5ECL3"
                     /db_xref="InterPro:IPR000061"
                     /db_xref="InterPro:IPR000626"
                     /db_xref="InterPro:IPR022030"
                     /db_xref="InterPro:IPR029071"
                     /db_xref="InterPro:IPR035967"
                     /db_xref="UniProtKB/TrEMBL:G5ECL3"
                     /db_xref="WormBase:WBGene00004188"
     intron_pos      36:1 (1/8)
     intron_pos      132:2 (2/8)
     intron_pos      186:0 (3/8)
     intron_pos      309:1 (4/8)
     intron_pos      402:2 (5/8)
     intron_pos      464:1 (6/8)
     intron_pos      533:0 (7/8)
     intron_pos      599:0 (8/8)
BEGIN
        1 MTAVVSNREE DSMNNEPSLS GRAIIGLIYP PPDIRTIVDK TARFAAKNGV DFENKIREKE
       61 AKNPKFNFLS ITDPYHAYYK KMVYDFSEGR VEAPKVPQAV KEHVKKAEFV PSAPPPAYEF
      121 SADPSTINAY DLDLIRLVAL FVARNGRQFL TQLMTREARN YQFDFLKPAH CNFTYFTKLV
      181 DQYQKVLVPS TNVVAQLQDD ATNKKRLIED INYRVSWEKH QKGLKDREEA EAEKERQAYA
      241 SIDWHDFVVV QTVDFQPGDT SQLPPLCTPK DVGARILLEA RNEMQKAAAE MQEMDMEESD
      301 SDDEDAVQAP EAPAFTAPLP PTKQKDVIVR DYDPKRNVTQ KPKAVENWII SPLTGERIPS
      361 DKLAEHVRYN TVDSQYKEDR DRHIGERSTE EPVLALGADI SRNLGNFAER RTDIFGVGGE
      421 QTMIGKKLGE EDNSQQGQNK LIWDGTEETR DMITRAVQNK VTLDQQINEI HRQHGFVADP
      481 SKEKIGAQQV PRHQSTQGNV TITQGITNIP GQMPSGWPPV PPMGMPGMPN QALPPIRQMD
      541 FGGGPPAKRP RTEDDLIPEA DWLKKVNGAI SLNVHLPQAP EHGMDGSIVQ FTIQVTAPMS
      601 ELKQQIQDRY GMPVGKQKLM SDGLFVKDNM SSAFYNLADR TAIYLQVKER GGKKK
//