LOCUS CCD73645.1 655 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans yeast PRP (splicing factor) related protein. ACCESSION BX284602-199 PROTEIN_ID CCD73645.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="prp-21" /locus_tag="CELE_W07E6.4" /standard_name="W07E6.4" /note="Product from WormBase gene class prp" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00004188" /db_xref="EnsemblGenomes-Tr:W07E6.4" /db_xref="GOA:G5ECL3" /db_xref="InterPro:IPR000061" /db_xref="InterPro:IPR000626" /db_xref="InterPro:IPR022030" /db_xref="InterPro:IPR029071" /db_xref="InterPro:IPR035967" /db_xref="UniProtKB/TrEMBL:G5ECL3" /db_xref="WormBase:WBGene00004188" intron_pos 36:1 (1/8) intron_pos 132:2 (2/8) intron_pos 186:0 (3/8) intron_pos 309:1 (4/8) intron_pos 402:2 (5/8) intron_pos 464:1 (6/8) intron_pos 533:0 (7/8) intron_pos 599:0 (8/8) BEGIN 1 MTAVVSNREE DSMNNEPSLS GRAIIGLIYP PPDIRTIVDK TARFAAKNGV DFENKIREKE 61 AKNPKFNFLS ITDPYHAYYK KMVYDFSEGR VEAPKVPQAV KEHVKKAEFV PSAPPPAYEF 121 SADPSTINAY DLDLIRLVAL FVARNGRQFL TQLMTREARN YQFDFLKPAH CNFTYFTKLV 181 DQYQKVLVPS TNVVAQLQDD ATNKKRLIED INYRVSWEKH QKGLKDREEA EAEKERQAYA 241 SIDWHDFVVV QTVDFQPGDT SQLPPLCTPK DVGARILLEA RNEMQKAAAE MQEMDMEESD 301 SDDEDAVQAP EAPAFTAPLP PTKQKDVIVR DYDPKRNVTQ KPKAVENWII SPLTGERIPS 361 DKLAEHVRYN TVDSQYKEDR DRHIGERSTE EPVLALGADI SRNLGNFAER RTDIFGVGGE 421 QTMIGKKLGE EDNSQQGQNK LIWDGTEETR DMITRAVQNK VTLDQQINEI HRQHGFVADP 481 SKEKIGAQQV PRHQSTQGNV TITQGITNIP GQMPSGWPPV PPMGMPGMPN QALPPIRQMD 541 FGGGPPAKRP RTEDDLIPEA DWLKKVNGAI SLNVHLPQAP EHGMDGSIVQ FTIQVTAPMS 601 ELKQQIQDRY GMPVGKQKLM SDGLFVKDNM SSAFYNLADR TAIYLQVKER GGKKK //