LOCUS CCD73176.1 1085 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Chloride channel protein protein.
ACCESSION BX284606-886
PROTEIN_ID CCD73176.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="clh-4"
/locus_tag="CELE_T06F4.2"
/standard_name="T06F4.2b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00000531"
/db_xref="GOA:H2L0J1"
/db_xref="InterPro:IPR000644"
/db_xref="InterPro:IPR001807"
/db_xref="InterPro:IPR014743"
/db_xref="UniProtKB/TrEMBL:H2L0J1"
/db_xref="WormBase:WBGene00000531"
intron_pos 53:1 (1/19)
intron_pos 84:0 (2/19)
intron_pos 129:1 (3/19)
intron_pos 220:1 (4/19)
intron_pos 360:1 (5/19)
intron_pos 421:2 (6/19)
intron_pos 450:0 (7/19)
intron_pos 501:0 (8/19)
intron_pos 534:0 (9/19)
intron_pos 587:0 (10/19)
intron_pos 625:2 (11/19)
intron_pos 669:1 (12/19)
intron_pos 721:0 (13/19)
intron_pos 762:2 (14/19)
intron_pos 819:1 (15/19)
intron_pos 844:1 (16/19)
intron_pos 878:0 (17/19)
intron_pos 942:0 (18/19)
intron_pos 1043:2 (19/19)
BEGIN
1 MNGAPYQQKK TSFVSGASDS EEEHLGSSEL VADDDESDDN CIVSPRFRKS SSRSALVRTT
61 SFNHKQYRSI KEMIIDLKQE PGKNGLHGLE NGSNHSDRKV TFTLENDLEF PKFRKNRSLW
121 LRMEMNRIKH KLISLSYLLS DWMFLALLGV AVAFISILVD MMVFSFQEIQ RKTVSIYNIY
181 GSDQSYLLWG CGLLGWCGYM IGLVAASACF VHYVAPQAIG SGIPEMKTII RGVILVDYLT
241 LKTLVSKIFG VAMALGSGVP IGKMGPFVHI ASVVANQMCL LAAKFDSAYR EESRRMECLA
301 AACAVGVACT FSSPVGGVLF SIEVTTMYFS VRSYWRGFFA ACCGATTIRL LRAYVVETEV
361 TVSAFYQTSF RPDAFSVDEL PLFALLGLLC GILGAGYISL YRCVVLFLRN NQYAKMVFQR
421 HWIVYPIVIS CIFSVVSYPH GLGMFSTGRI KFGTNLRDFF ANCSFIVTSS DDLVCGAEIY
481 SHWLNRGNIL LLLFLFVLVH FIFSIISFTL PVPSGVFLPV FVLGAAIGRF YGEIIGLALE
541 DIHIIHPGIY AIVGAAAFSA SVTHTVSVSV MIFEITGQLH FILPVMISVM LSNAVCAYLQ
601 PSFFDTIIKI KHLPFLPDIP PSNNLVHTTY AEHIMVTPVK FITKITTYNE IREAVQTGLR
661 LFPVVDSKNS QMLIGTVSRR YLTVLLNGKI GDHPRKVEAE KRVRQAIETI DNHFKDSEKE
721 LKEDRRRICS ETDFVTMQRK KSDIVTPLSQ TIKPLGPGEQ KNRFLVVPLP DVTEPKLYLP
781 PVPSSPTIPV ENTLKRRNSG TRRNALFSLR DMDEKSAKDF LDDHGIEHKT IHGNANEHHT
841 IIKNYMRQAK KYLVHMQFGN NKKGSHDNNP YDLSAEERKV WEEEQLALQL DLTENDIDPA
901 PIQLVKQTSL YKIHSIFSML QLSKAYVTDC GRLIGVVALS DLRKALEHTE EVIKTEKKNS
961 VSHSPSSSNV VKNNLRHVST NVIDILTPPL EVARGTTLET NTVVPDVISS PKEVFPPPPF
1021 EPRSSLRQRQ PRSINFGIEP RKRSGSEFGQ RPEEFVEAVA YLRRKSHAIV IPRLHEEPGE
1081 SSSSE
//