LOCUS CCD73132.2 2392 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Lin-5 protein.
ACCESSION BX284606-1106
PROTEIN_ID CCD73132.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="lfi-1"
/locus_tag="CELE_ZC8.4"
/standard_name="ZC8.4e"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00022500"
/db_xref="EnsemblGenomes-Tr:ZC8.4e"
/db_xref="GOA:H2L0I4"
/db_xref="UniProtKB/TrEMBL:H2L0I4"
/db_xref="WormBase:WBGene00022500"
intron_pos 66:1 (1/18)
intron_pos 112:2 (2/18)
intron_pos 142:2 (3/18)
intron_pos 185:0 (4/18)
intron_pos 215:0 (5/18)
intron_pos 257:2 (6/18)
intron_pos 379:0 (7/18)
intron_pos 842:2 (8/18)
intron_pos 1353:1 (9/18)
intron_pos 1497:0 (10/18)
intron_pos 1558:1 (11/18)
intron_pos 1706:1 (12/18)
intron_pos 1790:1 (13/18)
intron_pos 1845:0 (14/18)
intron_pos 2105:0 (15/18)
intron_pos 2187:0 (16/18)
intron_pos 2266:2 (17/18)
intron_pos 2317:1 (18/18)
BEGIN
1 MSDPQVEQDD RDRAYSFMSS DSGVDTTPHG RVVREKPLKS TTTYEKYPPS GFASESTKSI
61 SFSSPDKLKM STHDDTRSSG GGDGTIHIPS ADAKEPTPES PGSRSNYGEF YCPTTDSLKT
121 YSYTIHMKKS EEEIHDFDMG SWDEYSRDTS GENNYHHTSS FDDDLLLEID SSRGAAVARL
181 DRTQDDLNKF RQRIDNNVEQ QREYSEMMAA LQNKVHEYRK HIAELEGRMV GARNRMLDDP
241 TSNVMIFDNY DPGNTYITNH NVELWSPARG KRETILGGGG APGLTTVNVH AGAGYSGSGV
301 AGYGGGVQAM VGDPNANYEM IARLDEERRR SDEYRMQWEN ERQKSLSLED ENDRLRREFE
361 RYANDSKDKE KTFINRERNL AQYLSDEQRK MLDLWTELQR VRKQFSDLKT HTEEDLDKQK
421 AEFTRAIRNV NNISRNAAFS AGAGDGLGLY GLEDGGDVNR TTNNYEKVFI ETIKRMNGTG
481 GAGSASSADL LEELRKIRGG GSSEGDAELH KELMTKYEES IERNIELESR GDDSQRKIAE
541 LEAELRRNRE KLNEAQGALK KLHEMAQDSE KNVDGTVSIK RTRSLSPGKT PLPPSEALRA
601 VRNTFRNKDN DIQQLERKLK IAESQVKEFL NKFENADEAR RRLDKQFADA KREISNLQKS
661 VDEAERNSRR TDDKLRASEA ERVAAEKARK FLEDELAKLQ ASFQKSSTDD ARKLRDEMDE
721 HTNSIQEEFK TRIDELNRRV ENLLRENNRL KSEVNPLKDK YRDLENEYNS TQRRIEEKET
781 QIRYSDDIRR NIQKDLDDLR EKYDRVHTDN EKILGELEHA QKAAHLAEQQ LKEIKIQRDD
841 YQKQKDEHAR HLFDIRHKLE TEIKGRQDLE KNGARNNDEL DKLRQTISDY ESQINLLRRH
901 NDELDTTIKG HQGKITHLEN ELHSRSGEIE KLNDLNQRLQ KEKQDILNQK LKLDGDVQAL
961 KETIRKLENE LEKLRNENKE LVGKEARARD AANQQLSRAN LLNKELEDTK QDLKHSTDVN
1021 KQLEQDIRDL KERLANIGKG GRISRDSTTG TDGGAFGDRS SVADPSRTRG AAGSTVFVPA
1081 AEDIESRGGG EIDIPSSGDV IHGRDGRDGR DAGNRGTHTI TNTKERIERI EKNILDRYHD
1141 DELVEHKIRE VNDRWKRELE RLENEKDDLE RRIRELEDEL SQIGRGNDKT ENDITELKRK
1201 HAAEIDKLKS DISALHDKHL SDLDDEKEQY GKAVENLKSV EDDLRDKLNN LEKQLADSLN
1261 RENELEREKR DYDEKINSLY GQNQKIKDEW DDFRNDADKE IQKWKTDAYT VRSEAKALET
1321 TNTALKAQLQ AANDRIDHLT KTVNDHTSKV RDLTSQVRHL EDELADTKGN LVQKEMDLES
1381 TQNRLRSLED QHSTLQSDAN KWRGELDAAL RENDILKSNN TNMETDLTRL KNRLKSAEDA
1441 LKELKNSLSH AKTEKERLQN AFREKTKQAD HLNQLASQFD TKLTKLRNEL QDTNDKLITS
1501 DTERNALRNE LQKLSQELKF GNEQIQRKSD EYQTTIDDLA HSHRVSEDSR LNALQELEAR
1561 KYEINDLTSR LDSTEQRLAT LQQDYIKADS ERDILSDALR RFQSSANRVI NFHTFVDGGA
1621 GYVDGVPGGT SVIGGGPSAQ RSGAYDPSSG GVIGSGISGG PGGSDFGREI EIGRGDSDQS
1681 DVAYPRSVPF PPSADFSSGR PGAASAGGRV INNLDGTTTV NMNGGFDIAN LEGTLQSLLN
1741 KIEKLEMERN ELRDTLARMK KKTTETHTTI NQKETRYRNI EDNLQDAEEE RRALESRLQS
1801 AKTLLRSQEE ALKQRDEERR QMKSKMVAAE LQARGKEAQL RHLNEQLKNL RTDLDNAHTD
1861 IRSLRDKEEQ WDSSRFQLET KMRESDSDTN KYQLQIASFE SERQILTEKI KELDGALRLS
1921 DSKVQDMKDD TDKLRRDLTK AESVENELRK TIDIQSKTSH EYQLLKDQLL NTQNELNGAN
1981 NRKQQLENEL LNVRSEVRDY KQRVHDVNNR VSELQRQLQD ANTEKNRVED RFLSVEKVVN
2041 TMRTTETDLR QQLETAKNEK RVATKELEDL KRRLAQLENE RRNSSQLSDG WKKEKITLLK
2101 KIELLENEKR RTDAAIRETA LQREAIEKSL NAMERENKEL YKNCAQLQQQ IAQLEMENGN
2161 RILELTNKQR EEQERQLIRM RQEKGQIEKV IENRERTHRN RIKQLEDQIA ILRDQLDGER
2221 RRRREYVDRS MVNDIGRLGS NVLGIRNSYG DNSIDAIING GSRSVGFYPR STFASNPLTP
2281 PLGSSTPTHR PHVTDFRSAV DAGSSYRRPI STIEDSGSVY GGSIRDRDSV YGGGGRDSSF
2341 GTRAGDSISR AGVEPRDPSL VEIPSNEPPM TTSTHSQGGS RYDTLAPNRD DL
//