LOCUS CCD73131.2 2323 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Lin-5 protein.
ACCESSION BX284606-1109
PROTEIN_ID CCD73131.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="lfi-1"
/locus_tag="CELE_ZC8.4"
/standard_name="ZC8.4d"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00022500"
/db_xref="EnsemblGenomes-Tr:ZC8.4d"
/db_xref="GOA:H2L0I3"
/db_xref="UniProtKB/TrEMBL:H2L0I3"
/db_xref="WormBase:WBGene00022500"
intron_pos 43:2 (1/17)
intron_pos 73:2 (2/17)
intron_pos 116:0 (3/17)
intron_pos 146:0 (4/17)
intron_pos 188:2 (5/17)
intron_pos 310:0 (6/17)
intron_pos 773:2 (7/17)
intron_pos 1284:1 (8/17)
intron_pos 1428:0 (9/17)
intron_pos 1489:1 (10/17)
intron_pos 1637:1 (11/17)
intron_pos 1721:1 (12/17)
intron_pos 1776:0 (13/17)
intron_pos 2036:0 (14/17)
intron_pos 2118:0 (15/17)
intron_pos 2197:2 (16/17)
intron_pos 2248:1 (17/17)
BEGIN
1 MSTHDDTRSS GGGDGTIHIP SADAKEPTPE SPGSRSNYGE FYCPTTDSLK TYSYTIHMKK
61 SEEEIHDFDM GSWDEYSRDT SGENNYHHTS SFDDDLLLEI DSSRGAAVAR LDRTQDDLNK
121 FRQRIDNNVE QQREYSEMMA ALQNKVHEYR KHIAELEGRM VGARNRMLDD PTSNVMIFDN
181 YDPGNTYITN HNVELWSPAR GKRETILGGG GAPGLTTVNV HAGAGYSGSG VAGYGGGVQA
241 MVGDPNANYE MIARLDEERR RSDEYRMQWE NERQKSLSLE DENDRLRREF ERYANDSKDK
301 EKTFINRERN LAQYLSDEQR KMLDLWTELQ RVRKQFSDLK THTEEDLDKQ KAEFTRAIRN
361 VNNISRNAAF SAGAGDGLGL YGLEDGGDVN RTTNNYEKVF IETIKRMNGT GGAGSASSAD
421 LLEELRKIRG GGSSEGDAEL HKELMTKYEE SIERNIELES RGDDSQRKIA ELEAELRRNR
481 EKLNEAQGAL KKLHEMAQDS EKNVDGTVSI KRTRSLSPGK TPLPPSEALR AVRNTFRNKD
541 NDIQQLERKL KIAESQVKEF LNKFENADEA RRRLDKQFAD AKREISNLQK SVDEAERNSR
601 RTDDKLRASE AERVAAEKAR KFLEDELAKL QASFQKSSTD DARKLRDEMD EHTNSIQEEF
661 KTRIDELNRR VENLLRENNR LKSEVNPLKD KYRDLENEYN STQRRIEEKE TQIRYSDDIR
721 RNIQKDLDDL REKYDRVHTD NEKILGELEH AQKAAHLAEQ QLKEIKIQRD DYQKQKDEHA
781 RHLFDIRHKL ETEIKGRQDL EKNGARNNDE LDKLRQTISD YESQINLLRR HNDELDTTIK
841 GHQGKITHLE NELHSRSGEI EKLNDLNQRL QKEKQDILNQ KLKLDGDVQA LKETIRKLEN
901 ELEKLRNENK ELVGKEARAR DAANQQLSRA NLLNKELEDT KQDLKHSTDV NKQLEQDIRD
961 LKERLANIGK GGRISRDSTT GTDGGAFGDR SSVADPSRTR GAAGSTVFVP AAEDIESRGG
1021 GEIDIPSSGD VIHGRDGRDG RDAGNRGTHT ITNTKERIER IEKNILDRYH DDELVEHKIR
1081 EVNDRWKREL ERLENEKDDL ERRIRELEDE LSQIGRGNDK TENDITELKR KHAAEIDKLK
1141 SDISALHDKH LSDLDDEKEQ YGKAVENLKS VEDDLRDKLN NLEKQLADSL NRENELEREK
1201 RDYDEKINSL YGQNQKIKDE WDDFRNDADK EIQKWKTDAY TVRSEAKALE TTNTALKAQL
1261 QAANDRIDHL TKTVNDHTSK VRDLTSQVRH LEDELADTKG NLVQKEMDLE STQNRLRSLE
1321 DQHSTLQSDA NKWRGELDAA LRENDILKSN NTNMETDLTR LKNRLKSAED ALKELKNSLS
1381 HAKTEKERLQ NAFREKTKQA DHLNQLASQF DTKLTKLRNE LQDTNDKLIT SDTERNALRN
1441 ELQKLSQELK FGNEQIQRKS DEYQTTIDDL AHSHRVSEDS RLNALQELEA RKYEINDLTS
1501 RLDSTEQRLA TLQQDYIKAD SERDILSDAL RRFQSSANRV INFHTFVDGG AGYVDGVPGG
1561 TSVIGGGPSA QRSGAYDPSS GGVIGSGISG GPGGSDFGRE IEIGRGDSDQ SDVAYPRSVP
1621 FPPSADFSSG RPGAASAGGR VINNLDGTTT VNMNGGFDIA NLEGTLQSLL NKIEKLEMER
1681 NELRDTLARM KKKTTETHTT INQKETRYRN IEDNLQDAEE ERRALESRLQ SAKTLLRSQE
1741 EALKQRDEER RQMKSKMVAA ELQARGKEAQ LRHLNEQLKN LRTDLDNAHT DIRSLRDKEE
1801 QWDSSRFQLE TKMRESDSDT NKYQLQIASF ESERQILTEK IKELDGALRL SDSKVQDMKD
1861 DTDKLRRDLT KAESVENELR KTIDIQSKTS HEYQLLKDQL LNTQNELNGA NNRKQQLENE
1921 LLNVRSEVRD YKQRVHDVNN RVSELQRQLQ DANTEKNRVE DRFLSVEKVV NTMRTTETDL
1981 RQQLETAKNE KRVATKELED LKRRLAQLEN ERRNSSQLSD GWKKEKITLL KKIELLENEK
2041 RRTDAAIRET ALQREAIEKS LNAMERENKE LYKNCAQLQQ QIAQLEMENG NRILELTNKQ
2101 REEQERQLIR MRQEKGQIEK VIENRERTHR NRIKQLEDQI AILRDQLDGE RRRRREYVDR
2161 SMVNDIGRLG SNVLGIRNSY GDNSIDAIIN GGSRSVGFYP RSTFASNPLT PPLGSSTPTH
2221 RPHVTDFRSA VDAGSSYRRP ISTIEDSGSV YGGSIRDRDS VYGGGGRDSS FGTRAGDSIS
2281 RAGVEPRDPS LVEIPSNEPP MTTSTHSQGG SRYDTLAPNR DDL
//