LOCUS CCD72774.1 939 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Solute carrier family 12 member 9 protein.
ACCESSION BX284602-244
PROTEIN_ID CCD72774.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="T04B8.5"
/locus_tag="CELE_T04B8.5"
/standard_name="T04B8.5b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00020207"
/db_xref="EnsemblGenomes-Tr:T04B8.5b"
/db_xref="GOA:Q6A583"
/db_xref="InterPro:IPR004841"
/db_xref="InterPro:IPR018491"
/db_xref="UniProtKB/TrEMBL:Q6A583"
/db_xref="WormBase:WBGene00020207"
intron_pos 38:1 (1/13)
intron_pos 94:1 (2/13)
intron_pos 139:1 (3/13)
intron_pos 184:1 (4/13)
intron_pos 249:0 (5/13)
intron_pos 283:2 (6/13)
intron_pos 404:1 (7/13)
intron_pos 488:2 (8/13)
intron_pos 536:0 (9/13)
intron_pos 568:2 (10/13)
intron_pos 786:2 (11/13)
intron_pos 866:2 (12/13)
intron_pos 910:2 (13/13)
BEGIN
1 MSTTDAPPFG PSTSSMDMRV PIPDGPFIDN PNFVHENNEE SQSTPRGSTS GDGGGGSPSM
61 EFSSSRPGGL STISGVFAPV ALSMFSILLF LRMGFVVGQL GFLMTILQLA MAYAIVMLTV
121 LSLCAISSNG AVEGGGVYYM ISRSLGPEFG GAIGVLFFVA NVFSCALYIS GFTEALMNNI
181 GNGQFPDSPA WRFVYCVLVS LVLLVLSLLG SALFAKTALI TFVLISVCYG TWIVSVIFNG
241 RMEVLIPKVN TPAYRVLVNA SDPSQGTVED FNQTLTANYT GWSFHTLGEN MFPEYTMDYT
301 TEKPTDFALM FAIIFSGVTG LMAGANMSGE LARPSVSIPR GTVQAVFMTL FVYVMTAFLM
361 ATTSSRYLLQ NDYTVMMDTN FHRVFILIGI FSTTLFSSMS NLIGSSRVLN RLSHDKLFGC
421 LLRPAKIEIG DRNPVVSVVI TWMCVVLVFL VGAMNKIAKL TSIFFLLSYM GVNVATLALE
481 LTSAPNFRPT FKYFSWQTCA LGVVATATMM LVVDASMSAL GVVVLMSLIM VLHYQAPSVS
541 SGSISQALIY HQVRKYLLLL DVRKEHVKYW RPQILLLVSR PASACSLLDF VNDLKKSGLY
601 LVGHVRKGEM DSSQVVDPLQ QVFPYWLSLI DYLKLKAFVE LTMSNNIRHG IQQLMRLSGL
661 GAMKPNTVVI GFHELAPSQV TLQESQLLKD LRFSKIDRAA VVEYFTAGDY MPKELDGNLE
721 RLTPVDYVNV LKDVLHMTKN LCVARHFSKL DKEALARGWN GQKRYIDVWP VDLQKPQETG
781 LGWDNSSLFL LQLSCILSMS SRWRSYTKLR VFICVNSLQD MHRRERQLKN MLQTLRIEGE
841 SSVVPWDHVV CHYQPPNATA SANTATPSVD LPPAYVSAFN DMVKRYSEDA AITLLNLPVP
901 PDNADIDADR YLEMVRNLTD ALPPTLLVHG VSSVISTAL
//