LOCUS CCD72477.1 1744 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Myotubularin-related protein 5 protein.
ACCESSION BX284606-1165
PROTEIN_ID CCD72477.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="mtm-5"
/locus_tag="CELE_H28G03.6"
/standard_name="H28G03.6"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00003477"
/db_xref="EnsemblGenomes-Tr:H28G03.6"
/db_xref="GOA:Q9TXP3"
/db_xref="InterPro:IPR001194"
/db_xref="InterPro:IPR001849"
/db_xref="InterPro:IPR002219"
/db_xref="InterPro:IPR004182"
/db_xref="InterPro:IPR005112"
/db_xref="InterPro:IPR005113"
/db_xref="InterPro:IPR010569"
/db_xref="InterPro:IPR011993"
/db_xref="InterPro:IPR022096"
/db_xref="InterPro:IPR029021"
/db_xref="InterPro:IPR030564"
/db_xref="InterPro:IPR037516"
/db_xref="UniProtKB/Swiss-Prot:Q9TXP3"
/db_xref="WormBase:WBGene00003477"
intron_pos 27:1 (1/20)
intron_pos 91:0 (2/20)
intron_pos 189:1 (3/20)
intron_pos 233:2 (4/20)
intron_pos 265:0 (5/20)
intron_pos 332:0 (6/20)
intron_pos 616:0 (7/20)
intron_pos 665:0 (8/20)
intron_pos 851:1 (9/20)
intron_pos 885:0 (10/20)
intron_pos 988:1 (11/20)
intron_pos 1139:0 (12/20)
intron_pos 1179:1 (13/20)
intron_pos 1259:0 (14/20)
intron_pos 1348:0 (15/20)
intron_pos 1460:1 (16/20)
intron_pos 1536:2 (17/20)
intron_pos 1568:1 (18/20)
intron_pos 1618:1 (19/20)
intron_pos 1714:0 (20/20)
BEGIN
1 MRDPDKVKSG PICDTVAVIV LEESDDENAL PDVLHEVQSP HTSDNIPTSS IKKFARPRGW
61 YNQSVSSPSE FFYQILTTER GTRRIAYVLS TWEEDEKTLN FKAVSIVLIS QNFHPKAFKE
121 ILLEISNDLR TPEFSSSSEL IRFLTYELVE EGSTIEIRTK TLHVELGFEL IPISPVTGKD
181 VAMLFKMLGF QNVIKIIHAL LSDCRIVLAS SSLMRLSRCQ NAILSLLYPF EYVHSCVTIL
241 PDSLAEVLES PTPFLIGVLS EFVTSFGDEN IVVYLDNGEV HVPDHAEIYK SDDYYYNSLH
301 QRLRDVMFTT TSQEDLSIPN EERIEVDDFI LDKKLRACFI YYFAELLYGY QYYILYTRIK
361 GNFEKKLTTS LTFHVGAFRG FRKLTDMMSS SLLKSVYFQT FILTRALPRR KHDLFDEISC
421 FKELDQLIFK QNSTSSESKK IIEHISCELI QKERYMEKCS ARKQEIFTKI HWISGKELAQ
481 NNNSIIHTVK PKMRSNVILQ AMLPVVNTHA EYHANQFEAY AHRIEALRNC LAAIFEGKVA
541 FASKSLDAVK SSMRFAPLRI ELCRLLNQKC SHDKLTDKQF EDIALLMNAA LQAECEEDKD
601 GVVRSLMYLS NVYSRKVAQG MQQYMYTAVQ EHKVWKNQRF WTSCFYYEVH EMLFSEMLQK
661 DRKITESLWC HTLRPCAMEM INTDDTDQEE LVKQENEMIQ AQAKHFANIL ISLQIPLSEE
721 FFEHEDAHRS VLNEKCKWIV NTLDSILGVT GRINGLSLSR IQTYVEAHVE SLRDVYVEMS
781 TGEHLKKGNF DPVLAHGEFL ISDPIDCYLL TSIEESEMSL NRLENLLPAD GSLFLTNYRV
841 IFKGKSVDIN ATNGTIVQTI PLYSMESFKK LTNKKLIPTQ LIEKGVKIEH IISIRSSCAS
901 SIIIAFDEDE INNMAIEKFL EVIETNSHNS FAFYNTRKDM KVVENGSHKF GTLNSAIRGF
961 TKKKTDTRRI RSHSSHRGSI QLSFDKMEEL DYLKKNAHIR YAVIDYPRIG LNSKIVKLRM
1021 SHSNLDYTIC PSYPGNFIVP SETNESELAK VAKGFVEHRL PVVVWMNENG ALLVRASAFT
1081 SIDMVKKLKK VVNYRRNASK LTGSMTGSQQ TLHSKASSNE ESSSNIVAGA EIKSAEVQMN
1141 YIAKLSNSSQ RAVSYALPTQ YADKFSTFND GCTLTQNNAN GFPTTRIHRK ALYVLLEKGH
1201 GVKIPIDSNA EAIMVRSVKE SELRRSLQRA RQICSSEFQV ENRTSFLESW NASNWPQCVS
1261 RMIELSNSIV ALMNLYNSSV AICLEAGRSI TTILSSLSQL LSDPYYRTCD GFQVLVEKEW
1321 LAFGHYFHKD TETSSPSFIC FLDCVYQISQ QYPTAFEFSY FYISFLAYHS TAGYFRTFID
1381 DCEEKRLQSD ANEFYLPDNL ATINVWEFIK LRNRVSAAFY NELYEQIGDI VIPSSSIPQI
1441 HMWPFLAETH LKYGSPYDIE PASHEQQLVD PDYEEEEDWS KLNNTDIDER HLNRRVRSPE
1501 RDPANMDMIR LLQKSYLTEL FDASDRKTTT NGESNGKETI HELTPFTVGA RPVQCCYCTN
1561 ILTRWSKAVH CKKCRIHVHE GCVNRNITIG NITHTWDAKP FEDIKMPSGA IQIGTPQAEK
1621 MLHSPNNTLT RESMSPPTAN TIPPLCTGYL SKRGAKLKLW VPRFFVLYPD SPKVYYYEDF
1681 ENWKTAEKPS GCIDLVDFKS FNLEQTGRRG LIELHMKNKT HRLLSENINE AIRWKECIEQ
1741 VIRD
//