LOCUS CCD72424.2 544 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Inward rectifier potassium channel
irk-1 protein.
ACCESSION BX284606-1569
PROTEIN_ID CCD72424.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="irk-1"
/locus_tag="CELE_R03E9.4"
/standard_name="R03E9.4"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00002149"
/db_xref="EnsemblGenomes-Tr:R03E9.4"
/db_xref="WormBase:WBGene00002149"
intron_pos 46:1 (1/10)
intron_pos 98:2 (2/10)
intron_pos 123:2 (3/10)
intron_pos 178:2 (4/10)
intron_pos 226:2 (5/10)
intron_pos 272:0 (6/10)
intron_pos 295:0 (7/10)
intron_pos 400:0 (8/10)
intron_pos 460:0 (9/10)
intron_pos 500:2 (10/10)
BEGIN
1 MTLSVPDCAE MNRIRMSNHR KMSLGSAPLI ANGRPSPPPR RTSLAESIRT LAFTARRNSS
61 PLYRKSTKKL KKSRLVGKNG ICNVYNTNVP KKDRQYLRDI FTTMIDVKWR WMLMLFASAF
121 VLSWSIFGTT YYLIALVHGD LSLPTPVNHT ACVMNLDSVY SSFLFAVETH HTIGYGHRYI
181 TTECYLAGAI VCLQAICALL LQSFMVGIVF AKMARPKKRA ETIIFSDKAV ICLRDGQLCF
241 LCRVGDMRNT HLVEAHVRLQ FITDRETNEG EIEPLHQFEM KVGPSIADDD RLFLVWPTTL
301 CHVIDSRSPL YNYNQQTLMS AQFEIIVLLE GIVESTGMTA QAKTSYLPSE VLWGHRFRKL
361 VTYQRSNGSY QIDYDLFHST YPVRTPAMSP AEFYSSKPNL KDYYCHDSHE HKLEDNRSSD
421 STPLPSPSPY SYPSTPLNHF QSSSNSPVFS NNHSKFNTEA VTCEAGMLCP PTIVVQCPST
481 CASPNHMRRT RNQMDKSRTS SSCDLTRPST ALSDLEEECS DSGSPTKCQS PPVVPIHIEI
541 VSET
//