LOCUS CCD72285.2 546 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans MAM domain-containing protein protein. ACCESSION BX284606-521 PROTEIN_ID CCD72285.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="R04B3.3" /locus_tag="CELE_R04B3.3" /standard_name="R04B3.3" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00019868" /db_xref="EnsemblGenomes-Tr:R04B3.3" /db_xref="UniProtKB/TrEMBL:Q21698" /db_xref="WormBase:WBGene00019868" intron_pos 16:1 (1/8) intron_pos 87:0 (2/8) intron_pos 137:1 (3/8) intron_pos 190:0 (4/8) intron_pos 232:0 (5/8) intron_pos 296:0 (6/8) intron_pos 426:1 (7/8) intron_pos 514:0 (8/8) BEGIN 1 MMLRLTFFCW SFIHFSHSCL PNPFFGYSPG YGGYYAPPAA SFNYGPFPRV GPFRAEPQRG 61 PTAAAGGAAA VAQNPVQPRF AMQQDEIRSV STLNCASFAD KCRWSNTQEE ELDWTTLAES 121 PQAASFLPTL DVQNLPGQSA GSLTSPARNG WESGQLISDA LPCMTTGLRV TATAWRSKVG 181 PGGEQPKLQI CVRNSNEEKF PLINCNEFEI RNGVPMTADI PTPNDPNLPT QLVFSGNNFI 241 AKEGGAIFIQ DIVIEGSLKC NGETLDSHPV LISNPPSRAN ENDKRSFAES VGSLKGVVGI 301 PGLEAIDAGL PANLDEQRIA IAALQRSLQS NSVVEQQPKS AADIQSVISP VAQPAVVQTA 361 PQTPMTSAES LSTVPSLFES CLALSCNPSD LSCKFWRSSG NNRWEIGTSG RVANPLTGIN 421 LPPGTAQKFL VAPFFDSHIS SYTLVSEALN VPLLEEVYFC FYEYYATEGL SIAICTDKMD 481 CFYKKSGLTM GEGLRENKKW NIRCSKLPPG TYELRVIAEN AGENKGEVGF LPIRLSRDSK 541 GQQLIC //