LOCUS CCD72275.1 729 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Protein HID1 protein. ACCESSION BX284606-526 PROTEIN_ID CCD72275.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="hid-1" /locus_tag="CELE_K02E10.2" /standard_name="K02E10.2a" /note="Confirmed by transcript evidence" /db_xref="GOA:G5EG65" /db_xref="InterPro:IPR026705" /db_xref="UniProtKB/TrEMBL:G5EG65" /db_xref="WormBase:WBGene00001844" intron_pos 24:0 (1/14) intron_pos 87:0 (2/14) intron_pos 149:0 (3/14) intron_pos 205:1 (4/14) intron_pos 265:0 (5/14) intron_pos 379:1 (6/14) intron_pos 430:0 (7/14) intron_pos 456:1 (8/14) intron_pos 511:1 (9/14) intron_pos 550:1 (10/14) intron_pos 585:1 (11/14) intron_pos 617:1 (12/14) intron_pos 656:2 (13/14) intron_pos 709:2 (14/14) BEGIN 1 MGAQGSRVDF KQVVLDVTSK PGKDDETFWD QAWWPDSVNE IFAMISGEDI RKLRDESPKN 61 LATLVYKTVE KLQFSRNHPA TIDQKKTINA IRLLTRIVPY LLEDAEWRGY FWSPIPHGDA 121 AKPLAAVLLE TLSDLLFCPE FTITHANGQK IDDLSTIDSC EYIWEAGVGS GNKPPMVALH 181 YQNRTEILKL LLTCFAELIY APVSDETRLR WVIHFTSVTN PHVLPIFTSL LNIVCAYDPV 241 GYGLPYNYLL FNDSREPLVE IALQVLIVCL DKETQPNTDD SGYKDNYFIN YLSRIHREED 301 FDFMLKGITR LLSNPIHSSS SYLPNSTKRV NFHQELLVLL WKCCEINQKF MFYVLKTSDV 361 LDILVPILYH ISDARNDSGR VGLIHMGVFI ILLLSGERNF GVRLNKPYTA KANINVQTFT 421 GTHADLLILV IHKLITTGNY RLQTLFDCFL TIMVNVSPYM KSLSMVAANK LVHLVEAFST 481 PWFLFSSPTN PQLVFSLLEV FNNVIQYQFD GNSNLIYTII RKRNVFYQLS NLSTDAASIA 541 KTLSGRKSKS ANRDEMVDQL KSPTSTAPPE IPAADAPAAQ TLGGVSTTTG LAATPALASM 601 TGNVGNWEER PESSQDNEWI ATQEWADAWK SKLPLQTIMR LLQVLVPQVE KICIDKGLTD 661 ESEILKFLQH GTLVGLLPVP HPIVIRRYQT NIGTNHWFRI YMWGVIYLKH TQPPIWYDTD 721 VKLFEVQRA //