LOCUS CCD71834.1 434 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Nuclear hormone receptor family
member nhr-40 protein.
ACCESSION BX284606-549
PROTEIN_ID CCD71834.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="nhr-40"
/locus_tag="CELE_T03G6.2"
/standard_name="T03G6.2b"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00003630"
intron_pos 5:1 (1/11)
intron_pos 45:0 (2/11)
intron_pos 62:1 (3/11)
intron_pos 84:1 (4/11)
intron_pos 156:0 (5/11)
intron_pos 194:2 (6/11)
intron_pos 254:0 (7/11)
intron_pos 284:1 (8/11)
intron_pos 316:2 (9/11)
intron_pos 353:1 (10/11)
intron_pos 404:0 (11/11)
BEGIN
1 MPNNKREKIP EGTLCVVCSD FASGIHYSVA SCNGCKTFFR RALVNKQTFT CQFSGDCVVG
61 KSVRCVCRSC RLKKCFDMGM DPKAIQHDRD KIRYTKALKK KREEEKRLKE MVIKEDIGSP
121 QSIASDTYIN TSTPSSSTMI NILENDHHSY DPEAQNDVKA VIEDLLRLES RVKSLRNSYR
181 FESQVSATSC MYSSCLLDDI TYMAENTHEN EGTIEPFECS VEKLREWFVR DLSLMLEWGK
241 CLPIMERLLL NDKLALMKAF APIFPLIQLA FYTRNEFECD IVIKLEPDCT PKPIPERLNY
301 PDGSFIEKGN KPANTWEEMH TMLIDGCYKM MRQLKIKEST FVLYKMLLFH NPDADGLSSL
361 GKKTIENERM RLLTQLFSYL STERGKEAQT IFSNLLMMSA TLSKTASFIK RVFDFNHIFN
421 RTNDLIDQLI IVGL
//