LOCUS CCD71667.1 614 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Rab-GAP TBC domain-containing protein protein. ACCESSION BX284606-534 PROTEIN_ID CCD71667.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="tbc-12" /locus_tag="CELE_R11B5.1" /standard_name="R11B5.1" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00044061" /db_xref="EnsemblGenomes-Tr:R11B5.1" /db_xref="GOA:Q21928" /db_xref="InterPro:IPR000195" /db_xref="InterPro:IPR035969" /db_xref="UniProtKB/TrEMBL:Q21928" /db_xref="WormBase:WBGene00044061" intron_pos 67:1 (1/10) intron_pos 108:2 (2/10) intron_pos 143:1 (3/10) intron_pos 180:2 (4/10) intron_pos 242:0 (5/10) intron_pos 285:2 (6/10) intron_pos 321:1 (7/10) intron_pos 344:0 (8/10) intron_pos 476:2 (9/10) intron_pos 569:0 (10/10) BEGIN 1 MVPCPYSPTV CLFSDRKLAG RSCSQSSSLA TVVENLPLSY NTDTKSLDRT PSLGCQGGAE 61 SPSTAQETKF RRGHIRRSSY ESAQIQLNFA RRITTANGTP ALAPSAAKCL DEPLCSLSLN 121 TRADCSSSSS EQDQYDSGIG CTESDSKRSS LDRRSELSDF DEPPSKPETL SKSRFFNFPK 181 NFFSRNKEEK HGWKMFGSRN KQSGVMATTG LILEERPSGL PSKSADEAAH HKQMYLDILE 241 QAKKKEQRAE KERLQAKAEQ KRLEEQTAAH CRVWVEQILP KWEEMKDSKR CRELWWQGVP 301 AKVRGELWFL TIGNQIEITK ELYDGLMDQA EEKIAKQLAE QNKNSAERKE TSVTQIHLDA 361 TRTFTSLGMF QKDGPYYDHL LKLLSAYAIL RPDIGYVQSM TFIAAVLLIQ MDPYPAFISF 421 ANLLDRSLQS AFFGLKQPQM TEYFIAYDRY LEQELPALHQ HLDKLDVRPD LYLIEWTFAM 481 YAKSLPLDVT CRIWDVYFRD GEEFLFKAAL GILRMYEPKL LTMDFDDCVE FLTKLPNTLT 541 GAELFRNIEP FMRPYNGESS RSKKRFSQIF QEIDERVNPG GTTARTQITH NVQELKMSKS 601 LSGFIKDLLS SPSH //