LOCUS CCD71565.1 842 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Carotenoid oxygenase protein.
ACCESSION BX284606-1329
PROTEIN_ID CCD71565.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="F49E10.2"
/locus_tag="CELE_F49E10.2"
/standard_name="F49E10.2b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00018640"
/db_xref="EnsemblGenomes-Tr:F49E10.2b"
/db_xref="GOA:H2L060"
/db_xref="InterPro:IPR004294"
/db_xref="UniProtKB/TrEMBL:H2L060"
/db_xref="WormBase:WBGene00018640"
intron_pos 51:1 (1/11)
intron_pos 93:0 (2/11)
intron_pos 177:0 (3/11)
intron_pos 236:0 (4/11)
intron_pos 332:2 (5/11)
intron_pos 514:1 (6/11)
intron_pos 543:2 (7/11)
intron_pos 570:0 (8/11)
intron_pos 677:1 (9/11)
intron_pos 733:0 (10/11)
intron_pos 790:2 (11/11)
BEGIN
1 MSPIIALLLV GVPTILAQSF NQTHLGFPEA WDGDKYRELY CPSKNIPKWL DGYFLCQLSA
61 SYGNSSAPEG EKLNHMIDAI GAVGSFHVSN GQVVFSAQYY PARPYKIWEF YDRNMSKASV
121 PWAGWSDYNL TAMSRWEQVP ANPDSARFHP NLDFWKVGNR IVAGTEAPYW VGYEFDVRTL
181 QKFKLFPFKE ENDIFSTPRH TMIPISMAIH ERNDADGTIW GSFSAMNFEE QRFFQGIFTV
241 DTNGVRRVVG LYDYGVWDTN ACGSNDEYIG DKTLLPGYIH SITSTENFII LPITSLLINP
301 CKFKEPPLNN VRSAIQKGGL WGMDFYDMVP MRFLIFNKKT LEFTTSKPLE VFPSMFVTHQ
361 LNAFEADDGN FVADMVVYDS HDPYVKYFYT DFLTKQLYPS TARVLRFTLD SKKQRVMYNY
421 LVPQETIAAD FPQFNHNYEQ KPYQWGYLVQ HPFASGNSII KINVDEPAGN RNLEFRAEPT
481 LVLHEPWFVQ KPDSKKEDEG VLIVRGLDTA ENKGVLIVID AEKMVELGRA YVPISIPFGF
541 HNRFFSKKDL GLPEGFQVGQ SQYRPIEKKQ GFATLPLRKV STVPPTTSTS STTTQKPSTT
601 TTVPSTTPTS TTTTTTTTPK PTTSTSTSTS TTTTTTTSTT ATTTPQPTTT TTSEKPVTLT
661 TQTWTAPPTT TVKRTTPQTV PTTTPKIPRW WPLAGSGSTE QPWWQKVQTG QNTLPPLFPV
721 SKRVEEKVEK VSAKPNESDN KIPEQKPVTA TGSMDEIYEQ TLGALCSWLP KVFTSISNEL
781 CWKQGKTAAK WMAPLAQTYA ERFRMGRANR KVSPNDTPNL QPSLKQMAFD EQQQQAEPIR
841 FG
//