LOCUS CCD71431.1 542 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Homeobox protein ceh-18 protein. ACCESSION BX284606-846 PROTEIN_ID CCD71431.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="ceh-18" /locus_tag="CELE_ZC64.3" /standard_name="ZC64.3a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00000441" /db_xref="EnsemblGenomes-Tr:ZC64.3a" /db_xref="GOA:P41934" /db_xref="InterPro:IPR000327" /db_xref="InterPro:IPR001356" /db_xref="InterPro:IPR009057" /db_xref="InterPro:IPR010982" /db_xref="InterPro:IPR013847" /db_xref="InterPro:IPR017970" /db_xref="UniProtKB/Swiss-Prot:P41934" /db_xref="WormBase:WBGene00000441" intron_pos 16:1 (1/8) intron_pos 65:0 (2/8) intron_pos 104:2 (3/8) intron_pos 163:1 (4/8) intron_pos 219:1 (5/8) intron_pos 395:0 (6/8) intron_pos 502:0 (7/8) intron_pos 524:1 (8/8) BEGIN 1 MNTLENTFQF LAEVFEANGG CLVTERVSPS LSGASKRKSR PVKRIITEDE VIPEEEVVEE 61 EEEEKVEQPS EEVTCPAMQV DATDAILASL RQIANNDLSE HCIREDEGNT SAEVFSNGNG 121 EDMEQAGLAG TDLLRRVADM LQGNHNGSLN SHFLQQQFAA FKETVDPTPV STNGNGLLTP 181 ITTQLSPLFT STDAFNSPEK LLQAIMTPSL GFLGANGLGA SNSGLLSSPL IAPSPTLLQS 241 LMNTPTQPTA SLTPKKAENR PPVVSQTLKA SKRRLFDDTS RIEAASMSGD DRIDMNELEA 301 FAQTFKKQRI KFGFTQGDVG VALGKRYGTD FSQTTISRFE ALNLSFKNMC KLRPLLKEWL 361 ADVEMAIEGG ATVTDLIDKK TIHNGNHHTI HHVDIHETSI SNSISSVTAS SLLSREQHVK 421 RRRKRTNLDM NQRNALDTFF ALNPRPDHDK MTDIANSLEL DRDVVRVWFC NRRQKMRRVD 481 EPIEGEMVTP SVSPVFPHFS SMSALEQIQE AARLASCQAS NDDSDGTSGS PDAPSNDGCS 541 DL //