LOCUS CCD70868.1 941 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Lethal giant larvae homologue 2 domain-containing protein protein. ACCESSION BX284606-188 PROTEIN_ID CCD70868.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="lgl-1" /locus_tag="CELE_F56F10.4" /standard_name="F56F10.4" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00018987" /db_xref="EnsemblGenomes-Tr:F56F10.4" /db_xref="GOA:G5EEI1" /db_xref="InterPro:IPR000664" /db_xref="InterPro:IPR013577" /db_xref="InterPro:IPR036322" /db_xref="UniProtKB/TrEMBL:G5EEI1" /db_xref="WormBase:WBGene00018987" intron_pos 30:0 (1/13) intron_pos 109:1 (2/13) intron_pos 146:1 (3/13) intron_pos 226:0 (4/13) intron_pos 291:2 (5/13) intron_pos 343:1 (6/13) intron_pos 405:0 (7/13) intron_pos 482:0 (8/13) intron_pos 646:1 (9/13) intron_pos 732:1 (10/13) intron_pos 810:0 (11/13) intron_pos 861:1 (12/13) intron_pos 897:0 (13/13) BEGIN 1 MSSILRFIRS KFYHEPEEHA IEQYAVFDEG NRGGFTSDVV AFDYHNGCVV IGSKNGEVTF 61 YGYRGASWTV SLSKDSENKA RIEHIFFISS NIALVLCDGQ LIIPIHIKDG VITKKEELRF 121 NENHKSKWDI THVQKLSDDT FALVFSMNNT IYRIKSKTLK SEVLVKAEDF EKWLPDDTEL 181 ASITCLPEKP SILMLIAENG CVGVFNESQF VMKTSLRNYE DEAIQKLHWS SEKKKNVAFG 241 ISCNNKYTKW EFTVGKDCQI SAQEVNVYSA NQFGPYPCHQ IRHFSVCADA SDPNENFLIY 301 QGGKSSGKYD DRDLITISHG DFVEKLELSS EIVGIVGVSG SYEDCKKSGV VLICTKCEII 361 GIDLERESLN MMQPKHFLSI NNSTPTTHSR AIEIEENVWN RLESASKSYW ETNQMSTRDW 421 PLNFQKKIVT DANHQRASYR QVYLSGHSNG NICIWSSGGV GMSLMLVIRT SLEFDGASSF 481 DNEDSNYYNS DEKPEKPVRK IGLYDPFDDD EEMCITRVHF DPKSGIVIGT NRGGYVLMYE 541 LWDSARTLTH WEATPISCNN SPPDTRKRAL KPRKAELKYN AGYQIRLKNE SDLPLVFSMH 601 PSHRITDIVY LHKYHCLAVG SNFGIVMLDV NFGYLVYANS FNDDNNDSSN VSANQFQRFK 661 SLKKSLRKTF RRKKKGTETL MDSGGAVASS SNHVQHETSP KRIDDFEEEE VFMERPIEAR 721 EELGVLDCYA ENSKGTVTCL RMMRFPVLDD KNVDDIIAVG LHEGSVYFYA ISEHDVGLRM 781 TFKAEQIKKL SIPHKQPVVN LDITNEEGYF SASTRIVVIT EEQLRIYNCQ PMVKRDSYKI 841 TALEGLKIKN GMVARILNKK NSNNFESFVV LVANDGSLRV HSVQKASSFE SRKFIDPIDV 901 MALNSSCLSR DGDVAFLIKS SELQRSTVNL NFRGWSSTHK S //