LOCUS CCD70857.1 516 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans CCDC22 N-terminal domain-containing protein protein. ACCESSION BX284606-1071 PROTEIN_ID CCD70857.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="R08E3.3" /locus_tag="CELE_R08E3.3" /standard_name="R08E3.3b" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00019959" /db_xref="EnsemblGenomes-Tr:R08E3.3b" /db_xref="GOA:Q7JP60" /db_xref="InterPro:IPR008530" /db_xref="UniProtKB/TrEMBL:Q7JP60" /db_xref="WormBase:WBGene00019959" intron_pos 17:2 (1/11) intron_pos 38:2 (2/11) intron_pos 76:0 (3/11) intron_pos 118:1 (4/11) intron_pos 156:0 (5/11) intron_pos 245:0 (6/11) intron_pos 286:0 (7/11) intron_pos 324:0 (8/11) intron_pos 358:0 (9/11) intron_pos 427:0 (10/11) intron_pos 471:0 (11/11) BEGIN 1 MEEADAFIRD ACRHLECSFA DEDEIEFSTP QIFEFLVRCI WKIDNSSKQT ISSYVYPKVI 61 TTRLQLGNAI SNYLQKFHIR GDTALHTVLY GNINNLRSAF IELIRKLPAD AQEAVSLDQG 121 HQFLESVVKH EKSQPEWVPV YCRGLNRNRE WKLPNNTPET FPLCNFNKPI PNSDPRKWIS 181 QYINSSHTEK DFNFKLTKPA LPPKPIFAKK VDKEEETVEE ATEENNENLV LQAEYEQKLA 241 EYKALQEKRS QFEEQNRELE NKLSKYKPEL IEALDDPEAY VQKLMGKIAE LNKQMEEDTQ 301 IIENTKQANA QKKLQMREEL KNLGTDDEEI RRIQEMEADL EGVDERIESN VMLAEKLRKK 361 LSKIDDDVQS MYVLEQRSKE LDAMVRKQEQ DMVKMQEERH ALRKQEERES EAVNRSFAII 421 YNILLQHCDH YRGRLAMESF TRIHLYCMEI LEMLRENGAL KQAVGILQSE IYVEEQKQYD 481 KQFELLHQDY QEISDLNDQL FSEIRLKKPD FQMPTT //