LOCUS CCD70820.2 928 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Zinc metalloproteinase nas-39 protein.
ACCESSION BX284606-3877
PROTEIN_ID CCD70820.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="nas-39"
/locus_tag="CELE_F38E9.2"
/standard_name="F38E9.2"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00003555"
/db_xref="EnsemblGenomes-Tr:F38E9.2"
/db_xref="WormBase:WBGene00003555"
intron_pos 72:1 (1/21)
intron_pos 112:2 (2/21)
intron_pos 172:1 (3/21)
intron_pos 197:0 (4/21)
intron_pos 221:1 (5/21)
intron_pos 248:1 (6/21)
intron_pos 286:1 (7/21)
intron_pos 318:1 (8/21)
intron_pos 372:0 (9/21)
intron_pos 406:0 (10/21)
intron_pos 457:2 (11/21)
intron_pos 496:1 (12/21)
intron_pos 591:1 (13/21)
intron_pos 645:1 (14/21)
intron_pos 678:1 (15/21)
intron_pos 710:0 (16/21)
intron_pos 741:1 (17/21)
intron_pos 781:1 (18/21)
intron_pos 811:0 (19/21)
intron_pos 847:0 (20/21)
intron_pos 875:1 (21/21)
BEGIN
1 MRFSANIAII VNIIFLFIVV EFVLPTFIRS GDVRFRRYYR NNGRVSRAAT AKKERIWPEG
61 IIPFVIASNF SGEHQHLFLR AMRHWENFTC VSFVPRQPHH KHYITFTVDK CGCCSYVGRR
121 GEGPQAISIG KNCDKFGIVV HELGHVVGFW HEHTRPDRDM YVDIFYKSIQ TGQDYNFEKS
181 KPEEVDSLGE PYDFSSIMHY ARDTFSRGAF YDTILPKPNS GFRLEIGQRV QLSEGDIRQT
241 KKLYKCAECG GTLMQESGNL AIQHAGVCTW HIISPQGHTI FLNITGSTLS PPSSLCGKEE
301 DNVITVRDGV SISSPVLDRI CGGDSLFRTI ASSGNRMLIQ VRSSTPAASL PFATYYAICG
361 GPIYANEGVI HSPKYPESYP PNSDCQWTIH VDENSQVAIE FVYFHLEQHK ECIYDRLILT
421 EGISKNSKKD GKEMSETFCG LIEKKTIVSK TNQISLRFFS DNSVQKTGFE LRFTKELNEC
481 ATDKNICHHY CVNTVGGFKC ACRVGYSLSS NGFSCDSTCG GYLKASNGSI SSPNFPEMYP
541 NSKTCIWEIE APDGYHIFLN FTKFNVEGMK TECAYDYVKI GDSEKLCGEY HEALLFTTPR
601 NRVRIEFSSD SSVERDGFFA NFIADFDECQ NDNAGCEHTC QNRLGSYVCT CNPGYILAED
661 KHNCKEGSCF FEVNAPAGDI NSPNYPNDYP KGQNCSWHFV TTPGHRLMLT FSSFQVEEHA
721 QCKYDAVSVY DGGDGSAQLA GVFCGLAPPP LLLSSSNELY LTFSSDASVS RRGFQAHYTS
781 LCGGRLTAES TPGHIYSHAT FSDSKYGKNQ DCSWIVRAKS PGRGVRIQFS TFNIESEEGC
841 QYDYIEIYDG PEATLERLVG RFCGDTSPEV ITSTGPELLL IMHTDNAEEE KGFVAEYREA
901 PRSSSTKRTF VSKTRHSPLE EPIHDRNE
//