LOCUS CCD70626.2 761 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans MAM domain-containing protein protein. ACCESSION BX284606-193 PROTEIN_ID CCD70626.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="mam-1" /locus_tag="CELE_ZC13.3" /standard_name="ZC13.3" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00022504" /db_xref="EnsemblGenomes-Tr:ZC13.3" /db_xref="GOA:Q95Q40" /db_xref="InterPro:IPR000998" /db_xref="InterPro:IPR013320" /db_xref="UniProtKB/TrEMBL:Q95Q40" /db_xref="WormBase:WBGene00022504" intron_pos 20:0 (1/13) intron_pos 52:2 (2/13) intron_pos 86:1 (3/13) intron_pos 168:0 (4/13) intron_pos 210:0 (5/13) intron_pos 330:1 (6/13) intron_pos 394:1 (7/13) intron_pos 431:0 (8/13) intron_pos 535:2 (9/13) intron_pos 557:2 (10/13) intron_pos 582:1 (11/13) intron_pos 668:1 (12/13) intron_pos 713:0 (13/13) BEGIN 1 MSQLASAHSQ NTIVSKILQV ALGLFVTTSD LPPLSPNHEQ LSYDCSFHSD CRWMSLGNNV 61 DRWRVAKGEP DSLLWLAATG TMQIPREPYA LIESRGNPVD ALVTDAIRCQ MGYAELSFTY 121 WVIGNADIEI CLTDLEGGKF NCTGVLNSSI MPGKVSLKIP ELQKPFRIMI QPSSDPGVVV 181 LDDIRYDASI CHPDTSPETN SVRGRPDFMT TSPPKRIRPW TVKQTKKPKP TEVVPVKEIE 241 EETTTTTTTT TTTQLPTTTT TEEITTTMPS GPTTEVPFDL LIVGNRTRPL NDRRSGEIVD 301 DSTQLLCDFN NEFACRWGPE AGRWAIIDSG AIPSLEDSIA DPLLLPTFPA GLVLQGTAML 361 SSDPIQCQTG NAKVLFRYWS NGDILLQVCA LGHGDNNDII HCVEQSRSAR HERNTLAVFE 421 LNKDITGTFT LNIVPQWESG LKNRFLVIDE IAYIGQCDKS KLEPTSQAPL ILGRTTQPKE 481 VTIAGTKRRI QTTPTPTTTT TQVPEIEEEE VVEEEETTTT RRWPTTTTSG YTKKRRIFTT 541 FAPVFPEEVY TQTSKPRKST WTTTPEPKQD DYCDILNCSF DDTACNYLNH GLTKKPWTLR 601 NRGYGYPLTG TTDIRATQTN GQFVSAILDA EDIAILESPK FNATRSLNVL LFQYFRPSQM 661 TTIRLCLGSR YTNPMRTVSS FVQCPSILRS VTSKNAYRWN TVHIQLPPGT THFYLVAHSS 721 EKSESRAAIA IDNMRVAICD TRGFAPDYID ETTDFQSVLQ L //