LOCUS CCD70514.2 1970 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans TPR_MLP1_2 domain-containing protein
protein.
ACCESSION BX284602-2715
PROTEIN_ID CCD70514.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="npp-21"
/locus_tag="CELE_R07G3.3"
/standard_name="R07G3.3b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00019940"
/db_xref="EnsemblGenomes-Tr:R07G3.3b"
/db_xref="GOA:Q5WRT9"
/db_xref="UniProtKB/TrEMBL:Q5WRT9"
/db_xref="WormBase:WBGene00019940"
intron_pos 92:0 (1/20)
intron_pos 159:0 (2/20)
intron_pos 245:0 (3/20)
intron_pos 481:0 (4/20)
intron_pos 575:0 (5/20)
intron_pos 722:2 (6/20)
intron_pos 760:0 (7/20)
intron_pos 913:2 (8/20)
intron_pos 948:2 (9/20)
intron_pos 1115:0 (10/20)
intron_pos 1323:2 (11/20)
intron_pos 1340:0 (12/20)
intron_pos 1419:0 (13/20)
intron_pos 1490:1 (14/20)
intron_pos 1528:1 (15/20)
intron_pos 1614:0 (16/20)
intron_pos 1659:1 (17/20)
intron_pos 1712:1 (18/20)
intron_pos 1842:1 (19/20)
intron_pos 1918:2 (20/20)
BEGIN
1 MDVDAPLQAP EQPVADADDE EANWEMEKAE MKRIEFNQNR ELTDMRERVE DVSRSNSRML
61 EELTRHAAEI KEHINRQRVL ESTRNELTDK NLELETVVSR LKIEKEERDA AVVNATKLAQ
121 TAQVETFALK DEIKKLTNEQ ASLRHSKEAL EKEIQGIQFE RQKYATERSL HAESKTWLMQ
181 EVSERDNKVS SLRLELSNKD IQGANERLQY VQQINLLNSQ VENLNEKLDM LKFTNADLIK
241 RMENTELSKV SEIANLEEEI RCQTELQRVM KSSMEESKNA ADLFKDQLEA QENVLVEVRK
301 VLQEHQDEME RENLAHADAI KHRDEELAQT RAELVKVTEM MKSMSDVKLN VSEEELSELA
361 PAAAETVRYL RGGQSLSSLV LEHARVRGKL TEVEEDNVNL RNTLEELLET IDQNKPQMIS
421 QKMVTDELFD KNNRFEKQLD LAESERRQLL SQRDTAQRDL AYVRAELEKY QRDYEFVSKR
481 NAELLYAVER QSRMQDPNWS EQADEQLFQN IVQLQRRNVE LESDIENAKA SAAQAAINAQ
541 SEEMAQLRAD LAVTKKSEAE LKTKVEQTKA AFDSLKERTE HFKELVRDSV TAAEARTARL
601 RAEEAIAAKV VADATIERLR TQAEDYKADH LRREQDLEQR IRNTEANIAS VTETNIKLNA
661 MLDAQKTNTA SMDQEFKSAL KEKENIFEEL KKVTAVNAEN EQRLVDLGRQ TLEAVEQAGS
721 LRVRVRSLED ELQSARTEIN SLQFTANGQR NILEKEEQVR MSVVEMANFL SRVEAERLTH
781 ANTQLDVLRL ERDSLKASTT RLSDQLTHTK NESKLVQQRL EKELEIARQR LSEKETQVTR
841 DEMELADLRS KLASMHSQYT GSDASGMTPD RLKREYMQLK TRTQFLESEL DDAKRKLLES
901 ETTQKRMDAE HAISASHNTV LEENLKQSEQ MGVMEKERLV AKAKCFEDRS KQLAESLEQN
961 QKKLDELRSK NDEQLFAHER ETNELRRQLQ VASLNLDGVR RELEVVNNNL ISMQNEATRN
1021 SSALEQHTTI VRQFEDRITE IESANLRLQT ELNNKCAALV AESTAKREAD QMIEHAERLL
1081 QKKTEELNSI EEENRQKQAE YDEKLAQLSL QYESLSANLT NQNTTMEVKV NTDGSSSTVE
1141 NLQSLLQFVR QSKDEATSRA MTAEVEMRRL RAETAEYERG RNELLRKIRD LETEKIATTA
1201 ALVEKASLME KIQALTDVHN INAKLTEEKT KLQAQLHQIQ KEKADLENQR SRLSASNEEQ
1261 KLKIASSDQE ANQRKREIEQ LKQRVQTNAR GAASQPQLDQ LKAQLATARQ ESAAATAKAK
1321 AAEDKFNQTR QLAIKYRNEN TELKKLAEAP PGEGDPCAAR LKLQFDDFTA KINDYKTEIE
1381 NLNMKVLRMG ILEKSLKNTN DQINQLKQEN LKLTENIRMA QLQSVSATDV ESKPGPSSAS
1441 KSVSSIRQTP TKVLDPLSSA AKQPNEPDQT TGLKTSQQPP SFAAKRPSFA PTPTSQQKVS
1501 PVKRPIPPSI PNEPLDIIPP VPSDNIPDPT PPTNSFGTVL PVPHTFQTSV RVPTQSLFSS
1561 SSTTTVQPQP EKKNVLPSID SAPSTPGGNS SMVTTTSSMA PGQSIFGNIG NVPVPTTAPT
1621 DNLALPEESV IEGSAGQSSL VSGSIDQRKV QDIDLVANDG ESRDSTNVGG VSSSDVRRKR
1681 TANDFELSEA KRLRESPNET VTSSETRQQS NVADIPELDD DDGVLGMEHE VSDEDPNDNT
1741 IQEQRPDVID LENDEEVLED EMDEEEDDDS FGNDEEFEDE EEIPEDDDDD DVVVLSDGDD
1801 EPANDNDEES LNDIDDDDGI EEIEMVEESN NRDIEEVLGG EDSQPSLDDQ DREAASAVEE
1861 AEDEGRDPLG TIDEPSAPAD PTGAAGIGSS GRMGQDVQRV RLPTGLRDAE REDQCSSRFF
1921 SNETNDERPA ERLTARNLAR MQRPTRGAKP TRGVYTPARG NRGGRGGGTA
//