LOCUS CCD70484.2 2311 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Titin-like protein.
ACCESSION BX284606-841
PROTEIN_ID CCD70484.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="F35A5.1"
/locus_tag="CELE_F35A5.1"
/standard_name="F35A5.1"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00018024"
/db_xref="EnsemblGenomes-Tr:F35A5.1"
/db_xref="GOA:Q20007"
/db_xref="InterPro:IPR033183"
/db_xref="UniProtKB/TrEMBL:Q20007"
/db_xref="WormBase:WBGene00018024"
intron_pos 2076:2 (1/6)
intron_pos 2097:1 (2/6)
intron_pos 2168:0 (3/6)
intron_pos 2197:0 (4/6)
intron_pos 2242:0 (5/6)
intron_pos 2305:0 (6/6)
BEGIN
1 MSRAPPTPIK NPAKKWKPPW ESVDEEEEME VDEETPAPSK LEKKPSLKRK DAPTKPVPSP
61 GAPSPVPIKN PVKKWKAPWE DDEPMEEAPA APVPAKKVRD PSPKKVPAKP RDASPKKIMA
121 AKKEPETLPA VPPTPVKNPV KKFKAPWEDD EVDVEDVKDA PTVPAKKTPV LKKKEPAAAA
181 KPRDPSPKKA APSKEHDPIV PPTPIKNPAK KWKPPWEDDE VPTEEIKEPE PATRKVPALK
241 KKEPSTSVKP VSDPSPTKKV PVKKEPEVPP TPIKNPTKKW KPPWEDETPV EEVKEPPVPE
301 KKAPVLKKKD PAPAAKARDP SPSKAAPKKV EPSSPVVPPT PVKNPVKKYK PPWEVDDEPA
361 EEVKKPSAPE KKTPVLKRKE PEPSSTTPSS DPSPKKAAPA VKPRDSSPKK ATPLQADPKA
421 QEVPPTPVKN PVKKYKPPWE VDDEDPVEEV KQPEAPAKKT PVLKRKEPAA KDTAKPATSK
481 TPETPEKKDP VKPRDSSPKK VAAKPDSAQA PATPVKNPVK KWRPPWEDDE TPADDVSKPT
541 DAKKTPSLAK KDPAPAKESL KPKADTKAPA KPRDPSPKKV APTAPEKKTP VLAKKEPAGP
601 ADSKTKEPEK SKPRDPSPKK AVPAKPVPKT EVAPAAVKKP EPISKPKDTA PKKAEPNSPV
661 VPPTPVKNPV KKWKPPWEDD DAPAKPVSLP EPEKKTPVLA KKAPTKPDSE AAADPVSGPS
721 SKDPKLAKKA PVKPRDPSPM KAVPIKPAPK TEVPPAVVKK PEPVAKSRDP SPKKAKAEPN
781 SPVVPPTPVK NPVKKWKPPW EDDDAPAEPV NVPEPEKKTP VLAKKTPVKP RDPSPKKAVP
841 AKPSTKTDAP PVSVKKPEPV SKPKEPSPKK AEPNSPVVPP TPVKNPVKKW KPPWEDDDEP
901 TEEVKKPSEP EKKTPVLAKK EPEKPKDAPK VAAKPRDPSP KKAVPEKEPA KVAAKPRDLS
961 PKKAIPIPAN TQEAPPTPVK NPVKKWKPPW EDDDEPAEPV SAPEPEKKTP VLAKKAPAKP
1021 RDPSPKKAAP VAAKPDPKIP EVPPTPVKNP VKKWKPPWED DDEPSEPVSA PEPEKKTPVL
1081 AKKAPTKPAT KPDSEAAADP VSGPTSKDPK LSKKAPVEKP KPTTDPKDDK LKPSPAKKPE
1141 KAPEPAAPKK WKPVWDDDPD EPEADFTVPA PSKKPDTEDP ADPLGGPKTK DPKLNKKAPA
1201 EKPTEKPKPK EVSKEPPKPT EPPKPAAPKK WKPPWEDDPD EPEADFTMPA PKKPDTEDPA
1261 DSLGGPKPKD PKLAKKAPAK KPTETPKPKE VPKEPPKAAE PPKPAAPKKW KPPWEDDPDE
1321 PEADFTMPAP KKPDSEDPAD SLGGPKPKDP KLASKAPAKK PSETPKPKEV PKELPKPAEP
1381 SKPAAPKKWR PPWEDDPDEP EEPEADFTMP APKKPDTEDP ADSLGGPKPK DPKLAKKAPA
1441 KKPTETLKPK DAPKEPPKPA DPPKPAALKK PPWEDDPDEP EADFTMPAPK KPDTEDLADP
1501 PGGPKPKDPK LAKKAPAKKP SETPKPEDAP KEPPKPAEPP KPAAPKKWKP PWEEDPDEPE
1561 EPEADFTMPT PKKPDTEDPA DPLGRPKPKD PKLAKKAPAK KPSETPKPKD APKEPPKPAE
1621 PPKPAAPKKW KPPWEEDPDE PEEPEADYTM PAPKKPDTED PADPLGGPKP KDPKLAKKAP
1681 AKKPTDKPKS KDVPKEAPKP AEPPKPAAPK KWKPPWEEDP DEPEEPEADF TMPAPKKPDT
1741 EDPADPLGGP KKKDPKLAKK APSKKPTDKP KPKDLPKEEP KPAEPPKPAA PKKWKPPWEE
1801 DPDEPEEPEA DFTMPAPKKP DTEDPADPLG GPKKKDPKLA KKAPAKKPTD KPKPKDAPKD
1861 AKPTPEEPAK PVAPKKWKPP WEEDPDEPEE PEADFTMPAK KKPDTEDPAD PLGGPNKKDP
1921 KLAKKAPTKK PADKPKPSEE PEKPVAPKKW KPPWEEDPDD EPEADFTVPI KPGEDEDEPE
1981 DADDEEEPED EPAEDEPKKK KPKKHRKRPK KKKPVVEPEK EPTPEPVVPK APKWIAPIKK
2041 PEEPIPMPPK EKTIAERNKE ERIPPALRYA KKPRELEVYI PFVIPWEQTA ALITQEGMGA
2101 FGKSRAANVE VNFGDKPIVQ GAVDSKTVIP LWNDESKCAN RSGMTAFGAP REIDQNVVDH
2161 HVFNLMDKGK SQGIIPLLAK GTTYHPHGEY GTIRRQTADV KYKDGWKPGM DSESHGFISR
2221 QFIANSKEKA GSNLLDKRRT IISDALPQSK ECEAMIPLMF DGRAVETREG SEFGSFRPLV
2281 TNATGGYLMS YADEMKCKNI IPFQTAPSLV R
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