LOCUS       CCD70386.1               877 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Rap guanine nucleotide exchange
            factor 1 protein.
ACCESSION   BX284606-1172
PROTEIN_ID  CCD70386.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="Y34B4A.4"
                     /locus_tag="CELE_Y34B4A.4"
                     /standard_name="Y34B4A.4a"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00021320"
                     /db_xref="GOA:H2KZX7"
                     /db_xref="InterPro:IPR000651"
                     /db_xref="InterPro:IPR001895"
                     /db_xref="InterPro:IPR008937"
                     /db_xref="InterPro:IPR019804"
                     /db_xref="InterPro:IPR023578"
                     /db_xref="InterPro:IPR036964"
                     /db_xref="UniProtKB/TrEMBL:H2KZX7"
                     /db_xref="WormBase:WBGene00021320"
     intron_pos      26:1 (1/18)
     intron_pos      48:0 (2/18)
     intron_pos      82:0 (3/18)
     intron_pos      129:2 (4/18)
     intron_pos      168:0 (5/18)
     intron_pos      325:0 (6/18)
     intron_pos      367:0 (7/18)
     intron_pos      396:2 (8/18)
     intron_pos      414:1 (9/18)
     intron_pos      450:0 (10/18)
     intron_pos      494:0 (11/18)
     intron_pos      540:2 (12/18)
     intron_pos      603:2 (13/18)
     intron_pos      629:2 (14/18)
     intron_pos      686:0 (15/18)
     intron_pos      716:0 (16/18)
     intron_pos      782:2 (17/18)
     intron_pos      833:2 (18/18)
BEGIN
        1 MSKEIDISIR YLENVLSTNN STLILSSTAA VLEAVSKNCD TTNGELKRSI ISLLRIIDKK
       61 CFLNQDVDVN QIKFSLQEVG KLSTKYPKSH QKPGNEVKVK TNAEFREIET VPNPDEENID
      121 NLLNQLNLKK VPSFSPAFPD IGDDSDDENG ITTKQKEEER AEQHGQKVCE EEVVKLPDGR
      181 EIRMKKTKTV NVKQTTKHVT ISTKSANMPE VSRTFMNARR GFDEDEEEEN TNFGSSNMRG
      241 GDPFERFRSM LKDKDEKIEA IEGESSSDPG TPGSSSKSKT IERTSEVSQK VSEKKEKDGR
      301 LLAEHEASKL DKSNLFAKQV DTYQGAALID RKGEGSYEES TLVRSALPQD SQVATPPRMH
      361 VVEYMMMFGD DKKNNENEYL KGTTISSYVR LNNNLTTHEE QFKKKIQFEF STAGTSSTTI
      421 DLDNLSDLLN QTDFNCLRPP NKFLEDTPLI VEQPKAIDWQ REPTSAPPEK DLLLEHDGVD
      481 YVIFREKEGK VLEVRGGPKD ALIVYATQST HSSLLYQEAF LITFRTFISS LELVNKLIKR
      541 YLYMSLADDS QSESIARHTF SVIVRIIDET TQYELDFDLI TSVTSFVYRL IHDGNFTYSR
      601 ILRTRLLDRI KDSFDIQTVL GTNLCKPRKP HDLFDFKSAE IACQLTFIDS QLYHRIESAE
      661 LLWWAQEQNE KKSKNLVNFT EQFNNLSFWV RTLIITQGTQ KERERHMMKF VKIMKHLREM
      721 CNFNSYLAIL SAIMSTPLAR LEWSKNIKDA LKEHTAVMDT AQSYKNYRAL LQTAKPPCVP
      781 YIGIILQDLT FVHAGNPDTI PSDRCHGAKN MINFLKRWNQ FAILDSIRKL KKWNYDIKKN
      841 DIVVQYFNGF KDCIDEERTW QLSHQIKPSN RKSKTQA
//