LOCUS CCD70386.1 877 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Rap guanine nucleotide exchange factor 1 protein. ACCESSION BX284606-1172 PROTEIN_ID CCD70386.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="Y34B4A.4" /locus_tag="CELE_Y34B4A.4" /standard_name="Y34B4A.4a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00021320" /db_xref="GOA:H2KZX7" /db_xref="InterPro:IPR000651" /db_xref="InterPro:IPR001895" /db_xref="InterPro:IPR008937" /db_xref="InterPro:IPR019804" /db_xref="InterPro:IPR023578" /db_xref="InterPro:IPR036964" /db_xref="UniProtKB/TrEMBL:H2KZX7" /db_xref="WormBase:WBGene00021320" intron_pos 26:1 (1/18) intron_pos 48:0 (2/18) intron_pos 82:0 (3/18) intron_pos 129:2 (4/18) intron_pos 168:0 (5/18) intron_pos 325:0 (6/18) intron_pos 367:0 (7/18) intron_pos 396:2 (8/18) intron_pos 414:1 (9/18) intron_pos 450:0 (10/18) intron_pos 494:0 (11/18) intron_pos 540:2 (12/18) intron_pos 603:2 (13/18) intron_pos 629:2 (14/18) intron_pos 686:0 (15/18) intron_pos 716:0 (16/18) intron_pos 782:2 (17/18) intron_pos 833:2 (18/18) BEGIN 1 MSKEIDISIR YLENVLSTNN STLILSSTAA VLEAVSKNCD TTNGELKRSI ISLLRIIDKK 61 CFLNQDVDVN QIKFSLQEVG KLSTKYPKSH QKPGNEVKVK TNAEFREIET VPNPDEENID 121 NLLNQLNLKK VPSFSPAFPD IGDDSDDENG ITTKQKEEER AEQHGQKVCE EEVVKLPDGR 181 EIRMKKTKTV NVKQTTKHVT ISTKSANMPE VSRTFMNARR GFDEDEEEEN TNFGSSNMRG 241 GDPFERFRSM LKDKDEKIEA IEGESSSDPG TPGSSSKSKT IERTSEVSQK VSEKKEKDGR 301 LLAEHEASKL DKSNLFAKQV DTYQGAALID RKGEGSYEES TLVRSALPQD SQVATPPRMH 361 VVEYMMMFGD DKKNNENEYL KGTTISSYVR LNNNLTTHEE QFKKKIQFEF STAGTSSTTI 421 DLDNLSDLLN QTDFNCLRPP NKFLEDTPLI VEQPKAIDWQ REPTSAPPEK DLLLEHDGVD 481 YVIFREKEGK VLEVRGGPKD ALIVYATQST HSSLLYQEAF LITFRTFISS LELVNKLIKR 541 YLYMSLADDS QSESIARHTF SVIVRIIDET TQYELDFDLI TSVTSFVYRL IHDGNFTYSR 601 ILRTRLLDRI KDSFDIQTVL GTNLCKPRKP HDLFDFKSAE IACQLTFIDS QLYHRIESAE 661 LLWWAQEQNE KKSKNLVNFT EQFNNLSFWV RTLIITQGTQ KERERHMMKF VKIMKHLREM 721 CNFNSYLAIL SAIMSTPLAR LEWSKNIKDA LKEHTAVMDT AQSYKNYRAL LQTAKPPCVP 781 YIGIILQDLT FVHAGNPDTI PSDRCHGAKN MINFLKRWNQ FAILDSIRKL KKWNYDIKKN 841 DIVVQYFNGF KDCIDEERTW QLSHQIKPSN RKSKTQA //