LOCUS CCD70148.1 556 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein protein. ACCESSION BX284606-691 PROTEIN_ID CCD70148.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="pqn-37" /locus_tag="CELE_F40F4.8" /standard_name="F40F4.8" /note="Product from WormBase gene class pqn" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00004124" /db_xref="EnsemblGenomes-Tr:F40F4.8" /db_xref="InterPro:IPR029034" /db_xref="UniProtKB/TrEMBL:Q95ZT9" /db_xref="WormBase:WBGene00004124" intron_pos 45:0 (1/10) intron_pos 90:0 (2/10) intron_pos 123:2 (3/10) intron_pos 196:0 (4/10) intron_pos 245:0 (5/10) intron_pos 332:1 (6/10) intron_pos 353:1 (7/10) intron_pos 440:1 (8/10) intron_pos 474:1 (9/10) intron_pos 505:1 (10/10) BEGIN 1 MRLVVLIFSI FIVFSSGHTV KRQATNDVFQ DVVRQKTRGN KIQQCPCVIH PQSQQCISYD 61 SRYIAVNYEE AILSFLDLTK HSNNAAPLIN SNTFSCQSQE CMQCFSLLYH RLGALGFIPS 121 NYRSSISPLP QNQVQPNLCP RYNLARPIIA PVPPPIVPSY IQSLISAGQQ FRSTISPSSP 181 RSRSNHGSPP SASPPIPQNN RNNNNNNNNN NNNNQNGNSP NRPRNQNQNN RNQQNMQGQG 241 NFNQNQNQLQ NQRTQFRNNQ AMRNRFQAQQ RANQFQNNAQ RQFPQQNQNN FQQRPWQQQQ 301 QFQQQPRFQQ QQQFQNPRNF QNINGIQHHW NGRFWEPAGQ AISEAIRNPI QNTVGNGWQG 361 GWGSNGNGQG NGGGGGSPQT PVQIQPAPAP AVPQVPQVPG WGGGTGGGGN IGFPGWGGGG 421 SGENNNNHNW FGGLFGGFKN RQKRANPSVV IGKRFTINCM QRGDSEDDML ALCGSCWTWR 481 QLPENYFPRI INELSCKPDD FCLSGWGECV QQYRNVDVLR RDNGRWVPTV ITTSTCCDCR 541 VRAGTEIHSL VIGDKH //