LOCUS CCD70137.1 2229 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans C-type LECtin protein.
ACCESSION BX284606-687
PROTEIN_ID CCD70137.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="F28B4.3"
/locus_tag="CELE_F28B4.3"
/standard_name="F28B4.3"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00017892"
/db_xref="EnsemblGenomes-Tr:F28B4.3.1"
/db_xref="EnsemblGenomes-Tr:F28B4.3.2"
/db_xref="InterPro:IPR000742"
/db_xref="InterPro:IPR001304"
/db_xref="InterPro:IPR002035"
/db_xref="InterPro:IPR006582"
/db_xref="InterPro:IPR013032"
/db_xref="InterPro:IPR016186"
/db_xref="InterPro:IPR016187"
/db_xref="InterPro:IPR036465"
/db_xref="PDB:1WK1"
/db_xref="UniProtKB/TrEMBL:Q19853"
/db_xref="WormBase:WBGene00017892"
intron_pos 61:0 (1/22)
intron_pos 98:1 (2/22)
intron_pos 306:0 (3/22)
intron_pos 326:1 (4/22)
intron_pos 383:1 (5/22)
intron_pos 407:1 (6/22)
intron_pos 471:1 (7/22)
intron_pos 510:2 (8/22)
intron_pos 551:0 (9/22)
intron_pos 599:0 (10/22)
intron_pos 1535:1 (11/22)
intron_pos 1598:1 (12/22)
intron_pos 1637:2 (13/22)
intron_pos 1684:0 (14/22)
intron_pos 1728:0 (15/22)
intron_pos 1790:1 (16/22)
intron_pos 1905:0 (17/22)
intron_pos 1957:1 (18/22)
intron_pos 2018:0 (19/22)
intron_pos 2046:0 (20/22)
intron_pos 2151:2 (21/22)
intron_pos 2219:2 (22/22)
BEGIN
1 MRSWVLIAAL AVICLGAEPE LSHKERIRKV LKSWNPANSN QLFHPVSEQK IQFDEQSDLF
61 VDTHHISKRS IAEPHVFAGM ATRGCNKPGY TGATCQYPLC SARNPYIPDN KDSDDISIDA
121 TNLANCSQTY VVVVDETMRN IKIEVETESP LNPTFYLQSE SGDLIFPDTD RKTVTSYVAT
181 YETLAPGQYL LGPRADSGDE FCTMMMTAHT NIQVTGGFTS GDQPERSDYP TLKFAYFDTE
241 SAVVLHAQGL HFPGQIQAIG FTGAENHISR YIPMATRFNC TYPYILERYT CRKIGNNDIG
301 HNLLQVEGMS DNGYVFRRIL PYQCILPPVS TTTVPAPTTT AAPLTTCQNG GQVLKDSSGS
361 PYCYCFGLYT GRDCSQMLCA NGGFLPTPTS EHCECPEGFT GFHCQNIVCP GASGIDFNAE
421 NPTVTLVIRS RSQLSDVIQQ ATNSVSRIVD ELSAEPGYLT NFIVVLFDNA KLLVNQRYDS
481 WDAAMVDLLK AINSAPSDGG CDDVVFSAVA SALSLYPTNK SPIYVITDAN PNDSTEKQTI
541 VHLESYWRAP VYFIYVQPAI GSGCNTSPDS AGYRDMVDMA AMSSGNTFYF NNRTTISNFF
601 YVHMYNTLFR SQLALSGDYS HCANQNIYKS VAVDVTADQV VVVATGSNLK LQVTTPTGAH
661 PDFFVAFNDG VNYIWTSNQI FAGQWFFNLV SDSPNSACTF KVYQKKYNLG GMSQYNPDYD
721 IFWSFATTLT SAAGVLRQPV AGFDASPVFH VSNYPEFISM DRVHANLQIY AIRDGVQTEV
781 YGSSGMYRDA CEFHFYFPPF ICNVPDEVLY FNFFARDNND MALQRAGTML CSAVHPTPPP
841 QHQCQNGGVM NPTNTTCFCT PQFTGTYCQN IVCYNGGTVS GGQCVCPPGY AGESCEVPRC
901 IETGPNPEFI RYGVDMVFAV EITQQSLASI VMLDNNFQEI LRDVQMQDRG WIRNFVLVGF
961 NSTWGGPIAQ SPSNNLTAII AALHNLATNV PSDNGCSVKL WDALNHAIFA RDLVPGSFIE
1021 IFQTTPEYEL DQRSLGLFYD MSRAMDISLY GFLTAKPTLL PAGFVCNATQ VNYYVLFGMV
1081 TSSTGQTYIL QALEISNAIR LIPIQFSNGQ VTINGNNDCR HEDGLTTYFP VDAYTQTIQL
1141 TVFGYGTTIQ VYNGNGVLAE ALELFYDDYT GQSVYEIRQA CDNGWESFGQ YCVKFLTVND
1201 DILSMPQARN FCASAGGYLA DDLGDDKNNF YSSIAANTQF WIGLFKNSDG QFYWDRGQGI
1261 NPDLLNQPIT YWANGEPSND PTRQCVYFDG RSGDKSKVWT TDTCATPRPF ICQKHRYDSD
1321 HKPNTIGDAD LPAGDWYVKI KTNPTNSNPP YCSLSVRVQS SLQIVSGFAT KIGDDNPQID
1381 PIQDFSSNRL ITYVHSVDNE NRVPIMTDAI LWDFYNGTFY NGLKYQARFG CQYGWVSQDF
1441 PCPNSDNQNN EFGVLHVGED EFGNTFQRLT FGHCSPATIV CGNGGIRQNG QCICTDYWTG
1501 SRCTVPICVN GGTKNSDEAT CTCPDGYAGL NCQFEVCQPK VPQIFTDDTK TLLFVVETTR
1561 QNSDTVNQLI ANLKNIVTSA TNFAPFWFSY FGLVTFDTTG RTFEKYNYTT IDALITDLTA
1621 QSTAISTDGA CSMPYLGVLA HLLEHDNVIS IPNSEIFLVT AAGPSDLNKY GEAMNSLFNT
1681 EAHLHYIVSK SANCPTFEGV NNVQDMTWLG YGSSGNILFT DSSNIVSLMN SYLPSLYGAS
1741 ILQDPTGPAN YSCTDGSLPW FVPVDSNTTF IYVTTSSEFG SLSVKDPLGQ AHNVAPAYNV
1801 NSQKFYKIEV DRLGGIWTLQ LVQPPGLCLA HIYSTGGARV YTKFSLPNPV GGKEDPLGAH
1861 QDGRFVQPVS GFDNVAVFHI AGKPMQRGQL QYVEIFDIGQ VTVTNVLRSE LYRREGCSYE
1921 YYSDLFTCSG DMIAVFIHGV DEYNQKFRRQ QIVVCNGRNP TTGQPMTGTM VPVTGSMAPV
1981 TQATQQTQGP VTQQTQGPIT QATQPPQTVQ TQAPVTPTQN PQTGLQFDIV FLIDGSQAAQ
2041 QNFDSFTKFI QTMMVSFDVG IAGAHVGLVV VAADLNDQAP PVANLNAITS QQMLISYLNG
2101 LKDGYTDFDD AGQVLTYNLQ VVSSTDYMAA TAGYRAGISN HVIVYITSTT SFFTDPTPSA
2161 KTIIAQKKYG IITVGYGGAV DTGKLQTISG GSACSFTATD FTTLNNQIKP IQQLITAAST
2221 NGGNYCKST
//