LOCUS       CCD69992.1              1073 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans B-cell receptor CD22-like protein.
ACCESSION   BX284606-185
PROTEIN_ID  CCD69992.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="igcm-1"
                     /locus_tag="CELE_F39H12.4"
                     /standard_name="F39H12.4"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00018215"
                     /db_xref="EnsemblGenomes-Tr:F39H12.4"
                     /db_xref="GOA:Q9TXI8"
                     /db_xref="InterPro:IPR003598"
                     /db_xref="InterPro:IPR003599"
                     /db_xref="InterPro:IPR003961"
                     /db_xref="InterPro:IPR007110"
                     /db_xref="InterPro:IPR013098"
                     /db_xref="InterPro:IPR013106"
                     /db_xref="InterPro:IPR013162"
                     /db_xref="InterPro:IPR013783"
                     /db_xref="InterPro:IPR036116"
                     /db_xref="InterPro:IPR036179"
                     /db_xref="UniProtKB/TrEMBL:Q9TXI8"
                     /db_xref="WormBase:WBGene00018215"
     intron_pos      22:1 (1/15)
     intron_pos      74:2 (2/15)
     intron_pos      141:1 (3/15)
     intron_pos      178:2 (4/15)
     intron_pos      206:2 (5/15)
     intron_pos      339:0 (6/15)
     intron_pos      386:2 (7/15)
     intron_pos      461:0 (8/15)
     intron_pos      513:0 (9/15)
     intron_pos      799:0 (10/15)
     intron_pos      871:0 (11/15)
     intron_pos      931:1 (12/15)
     intron_pos      976:2 (13/15)
     intron_pos      1013:2 (14/15)
     intron_pos      1046:1 (15/15)
BEGIN
        1 MGGKRLFFLF FLFLVQLTNS ADSSDVFLKE PSSEPYFLQE GNEGIVIPCV VKPEYFDRQK
       61 YEINWARYNN GQLRMITKND KLLAKKHSRF ILENDSATGN YSLRITEVEK NSVEGTYHCN
      121 VIGTDDSDVQ YSALATVVVL VPPGDPIIST TPSESVIEGD FMTAKCVSVG GSPQPTFTWT
      181 LPNDTIASSA IFTTQFRDGA TESLLHFRVT SSDDGKSVQC DVTNRAMLGG ETKQVKSSQL
      241 NVLYKPVVFV TPTENLTHLS VEEGELVNLT CNSASNPPAH SYEWKHIASG ERYQGKIWPI
      301 RVDSSMSGDF ECRSTNELGE GTAVLKMVVQ HIPRINVPES ISPNEMEDID ILCEVSAVPE
      361 VIDIKWVGPN GFKQNGSRLT ITSISKAQSG NYTCMATNFL TVYGHSGSQQ RMGTGTTIVD
      421 VKRKPGQAQI VSARQNVDVG ETIKLMCQAE DAGNPSASYT WASPSSGGIF GLEGHTEKSF
      481 EVRNAQLSDN GVYSCKAYND LGEGKIGTVM ITVIEKARIS SPLATERIFT SGEQGKILEC
      541 EAQGYPSPVI KWLKDGRPVK QSIYASSATS ESKCLPEDFC TQTVASTLTL AGPLKWSDKG
      601 NFTCVADNGS DKTDKDSSSW TIVRVLHKPV FLNRKFPEKS LAAADIGSQA IIRCKVSARP
      661 EPEFHWMFRD SEISENERHS FHTVGITGKP DEYEQLLQIE SVQESDYGEY VCRATNGNGG
      721 DHVVIELRKT SPPALPLDLQ KLSATSNSVL LGWVPQFDGG ADQTYVLETR KIDPFTGEID
      781 GNAPVSKLNI NAVQQDQEID GTLVSKNIFN FTGLTPLSTY NLRIQAVSEK GESEFTPVLI
      841 ASTEDVVEDA NMMSPSRLVL DSSEQKINVE PKLPSDACTL LYVFLDGIWR TSTCHTSSNP
      901 IGNIIPGREY RARFCTTANG LKCSPVSKTI SSGSGSVWKT NVFFPFLFFI FIGLAICVFF
      961 LVCCKTRSNP KTSKLSPIIL TSLPGDELKR PADYEEPKHA TFAITENETN HLSQHDAKST
     1021 KPPGLNMEYD VSTDCYLQEN TEVLKNTSLS GFTNGDVLEN SDEDRRIVRE IIV
//