LOCUS       CCD69986.1               892 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Smad protein daf-3 protein.
ACCESSION   BX284606-173
PROTEIN_ID  CCD69986.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="daf-3"
                     /locus_tag="CELE_F25E2.5"
                     /standard_name="F25E2.5a"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00000899"
                     /db_xref="EnsemblGenomes-Tr:F25E2.5a"
                     /db_xref="GOA:Q95QI7"
                     /db_xref="InterPro:IPR001132"
                     /db_xref="InterPro:IPR003619"
                     /db_xref="InterPro:IPR008984"
                     /db_xref="InterPro:IPR013019"
                     /db_xref="InterPro:IPR013790"
                     /db_xref="InterPro:IPR017855"
                     /db_xref="InterPro:IPR036578"
                     /db_xref="UniProtKB/TrEMBL:Q95QI7"
                     /db_xref="WormBase:WBGene00000899"
     intron_pos      9:1 (1/14)
     intron_pos      72:1 (2/14)
     intron_pos      106:1 (3/14)
     intron_pos      158:1 (4/14)
     intron_pos      209:0 (5/14)
     intron_pos      289:0 (6/14)
     intron_pos      331:0 (7/14)
     intron_pos      551:1 (8/14)
     intron_pos      595:0 (9/14)
     intron_pos      635:2 (10/14)
     intron_pos      653:1 (11/14)
     intron_pos      710:2 (12/14)
     intron_pos      813:0 (13/14)
     intron_pos      858:2 (14/14)
BEGIN
        1 MGDHHNLTGL PGTSIPPQFN YSQPGTSTGG PLYGGKPSHG LEDIPDVEEY ERNLLGAGAG
       61 FNLLNVGNMA NEFKPIITLD TKPPRDANKS LAFNGGLKLI TPKTEVPDEH TPMMSPVNTT
      121 TKILQRSGIK MEIPPYLDPD SQDDDPEDGV NYPDPDLFDT KNTNMTEYDL DVLKLGKPAV
      181 DEARKKIEVP DASAPPNKIV EYLMYYRTLK ESELIQLNAY RTKRNRLSLN LVKNNIDREF
      241 DQKACESLVK KLKDKKNDLQ NLIDVVLSKG TKYTGCITIP RTLDGRLQVH GRKGFPHVVY
      301 GKLWRFNEMT KNETRHVDHC KHAFEMKSDM VCVNPYHYEI VIGTMIVGQR DHDNRDMPPP
      361 HQRYHTPGRQ DPVDDMSRFI PPASIRPPPM NMHTRPQPMP QQLPSVGATF AHPLPHQAPH
      421 NPGVSHPYSI APQTHYPLNM NPIPQMPQMP QMPPPLHQGY GMNGPSCSSE NNNPFHQNHH
      481 YNDISHPNHY SYDCGPNLYG FPTPYPDFHH PFNQQPHQPP QLSQNHTSQQ GSHQPGHQGQ
      541 VPNDPPISRP VLQPSTVTLD VFRRYCRQTF GNRFFEGESE QSGAIIRSSN KFIEEFDSPI
      601 CGVTVVRPRM TDGEVLENIM PEDAPYHDIC KFILRLTSES VTFSGEGPEV SDLNEKWGTI
      661 VYYEKNLQIG EKKCSRGNFH VDGGFICSEN RYSLGLEPNP IREPVAFKVR KAIVDGIRFS
      721 YKKDGSVWLQ NRMKYPVFVT SGYLDEQSGG LKKDKVHKVY GCASIKTFGF NVSKQIIRDA
      781 LLSKQMATMY LQGKLTPMNY IYEKKTQEEL RREATRTTDS LAKYCCVRVS FCKGFGEAYP
      841 ERPSIHDCPV WIELKINIAY DFMDSICQYI TNCFEPLGME DFAKLGINVS DD
//