LOCUS CCD69986.1 892 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Smad protein daf-3 protein. ACCESSION BX284606-173 PROTEIN_ID CCD69986.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="daf-3" /locus_tag="CELE_F25E2.5" /standard_name="F25E2.5a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00000899" /db_xref="EnsemblGenomes-Tr:F25E2.5a" /db_xref="GOA:Q95QI7" /db_xref="InterPro:IPR001132" /db_xref="InterPro:IPR003619" /db_xref="InterPro:IPR008984" /db_xref="InterPro:IPR013019" /db_xref="InterPro:IPR013790" /db_xref="InterPro:IPR017855" /db_xref="InterPro:IPR036578" /db_xref="UniProtKB/TrEMBL:Q95QI7" /db_xref="WormBase:WBGene00000899" intron_pos 9:1 (1/14) intron_pos 72:1 (2/14) intron_pos 106:1 (3/14) intron_pos 158:1 (4/14) intron_pos 209:0 (5/14) intron_pos 289:0 (6/14) intron_pos 331:0 (7/14) intron_pos 551:1 (8/14) intron_pos 595:0 (9/14) intron_pos 635:2 (10/14) intron_pos 653:1 (11/14) intron_pos 710:2 (12/14) intron_pos 813:0 (13/14) intron_pos 858:2 (14/14) BEGIN 1 MGDHHNLTGL PGTSIPPQFN YSQPGTSTGG PLYGGKPSHG LEDIPDVEEY ERNLLGAGAG 61 FNLLNVGNMA NEFKPIITLD TKPPRDANKS LAFNGGLKLI TPKTEVPDEH TPMMSPVNTT 121 TKILQRSGIK MEIPPYLDPD SQDDDPEDGV NYPDPDLFDT KNTNMTEYDL DVLKLGKPAV 181 DEARKKIEVP DASAPPNKIV EYLMYYRTLK ESELIQLNAY RTKRNRLSLN LVKNNIDREF 241 DQKACESLVK KLKDKKNDLQ NLIDVVLSKG TKYTGCITIP RTLDGRLQVH GRKGFPHVVY 301 GKLWRFNEMT KNETRHVDHC KHAFEMKSDM VCVNPYHYEI VIGTMIVGQR DHDNRDMPPP 361 HQRYHTPGRQ DPVDDMSRFI PPASIRPPPM NMHTRPQPMP QQLPSVGATF AHPLPHQAPH 421 NPGVSHPYSI APQTHYPLNM NPIPQMPQMP QMPPPLHQGY GMNGPSCSSE NNNPFHQNHH 481 YNDISHPNHY SYDCGPNLYG FPTPYPDFHH PFNQQPHQPP QLSQNHTSQQ GSHQPGHQGQ 541 VPNDPPISRP VLQPSTVTLD VFRRYCRQTF GNRFFEGESE QSGAIIRSSN KFIEEFDSPI 601 CGVTVVRPRM TDGEVLENIM PEDAPYHDIC KFILRLTSES VTFSGEGPEV SDLNEKWGTI 661 VYYEKNLQIG EKKCSRGNFH VDGGFICSEN RYSLGLEPNP IREPVAFKVR KAIVDGIRFS 721 YKKDGSVWLQ NRMKYPVFVT SGYLDEQSGG LKKDKVHKVY GCASIKTFGF NVSKQIIRDA 781 LLSKQMATMY LQGKLTPMNY IYEKKTQEEL RREATRTTDS LAKYCCVRVS FCKGFGEAYP 841 ERPSIHDCPV WIELKINIAY DFMDSICQYI TNCFEPLGME DFAKLGINVS DD //