LOCUS CCD69983.1 624 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans ShKT domain-containing protein protein. ACCESSION BX284606-169 PROTEIN_ID CCD69983.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="F25E2.2" /locus_tag="CELE_F25E2.2" /standard_name="F25E2.2a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00017780" /db_xref="EnsemblGenomes-Tr:F25E2.2a" /db_xref="UniProtKB/TrEMBL:G4SF79" /db_xref="WormBase:WBGene00017780" intron_pos 54:1 (1/10) intron_pos 94:1 (2/10) intron_pos 133:1 (3/10) intron_pos 159:0 (4/10) intron_pos 188:1 (5/10) intron_pos 228:1 (6/10) intron_pos 300:1 (7/10) intron_pos 401:1 (8/10) intron_pos 530:2 (9/10) intron_pos 602:1 (10/10) BEGIN 1 MNIVTFLLFG IFPLSAAISP INLENCNPGS YFVENYIKYQ CYQSGSVKGY NIAGCQPSND 61 LTGVTLQQWE THNEKWFKYH CVIDGTNAQY SVKTCLDPVG EVLPVGKTRS FPDGETFTCF 121 IERNKVKLNH QTTAGCQVGD QVYGDRATWI DRREDVIIIG SENKVVGKGS TMQCKKSENG 181 SFVVEVAACL TAENTYIRPE DFGTVDDAVV KCAMVEGKCV LRKAEVTELG CRHNGKVYRH 241 NEEWNSEDGA TVYACQFGKV EKEGCLVGNY LIPLYAIRYV DGNAFYCFQG TQVRSFGDLK 301 GCTTTSGDII QFENRARNGD RLESCGFSIN RDGTVEFKWT QVGCIYSKEM ITVNAIQQFG 361 DQYVHCALNG TAGYIVKMMT REEVEKWLTA TKQQWSNIVS GKDGKGNSVK REVPTTPLPT 421 TTTTTTTTPK PTTTTTTTTT PAPTTTQKPT TTTTTPAPTT TSTTSIPTTI ATTTAAPLKK 481 CTDFVEDCDK LRIYCHTEAE NAKFLKEAVK KFSTNPKNRS RMLEFIDHVF LEEQEPAHQK 541 EQNKEQDCPI NSKSCEKCSH SKCEKCAKHP HHHCKCEDQK EFNRKIVRAL CPKTCDICNE 601 THPSVSTILS TRISGACLKP QCEI //