LOCUS CCD69763.1 740 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Homeodomain-interacting protein kinase 1 protein. ACCESSION BX284606-916 PROTEIN_ID CCD69763.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="hpk-1" /locus_tag="CELE_F20B6.8" /standard_name="F20B6.8c" /note="Partially confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00001994" /db_xref="EnsemblGenomes-Tr:F20B6.8b" /db_xref="WormBase:WBGene00001994" intron_pos 27:0 (1/5) intron_pos 210:2 (2/5) intron_pos 253:2 (3/5) intron_pos 500:1 (4/5) intron_pos 661:2 (5/5) BEGIN 1 MAPQSVTATA KTTTNRGKVS GEGEYQLIKN EVLCSPYGNQ YEVLEFLGKG TFGQVVKAWK 61 KGTSEIVAIK ILKKHPSYAR QGQIEVSILS RLSNENSEEF NFVRAFECFN HKSHTCLVFE 121 MLEQNLYDFL KQNKFMPLPL NAIRPILFQV LTALLKLKSL GLIHADLKPE NIMLVDPQQQ 181 PYRVKVIDFG SASHRSKAVT NTYLQSRYYR APEIILGLPF NESIDMWSLG CVIAELFLGW 241 PLYPGSSEYD QIRFIIQTQG LPPTSMLESA SKLHRFFKEV KSESPNHTNV GGSYYRLKTV 301 EEYEASSSTA KSKETRKYIF NVIDDISRVC YGFESDPVEH LCDRIDRQEF VDVLKKMLVL 361 NPDFRITPAE GLESKFVTMT HINGYNFANY VHEAHKRMEI CRKPGPAMAT PYRAANVATP 421 ITPVEKPPAP KLQQPMIAVL PQLNQIAATN IPPVPTQPDL TNLMHHYSQM AAATGSAATA 481 AQFFYQPLPP APLFQYAQLH HPFAARPPHF LSLATPSHMV PQFVPVPIMD PSMLQGQWPP 541 GAAQQFAVLA NDIMRVPAPQ GINQMFASTP QTFSLPQFLS SSIPSATTAF NGNAPNIPFP 601 EENSSWALGT AAQQQQQQAQ RAQSMINGNV KVKPLAAQPK KNSPAPSVIT LSSDEDSNGA 661 GSSNSGSTTR TGAVNPVRND TLPMGNTIKT EDILVPPTTF DGQLPNLQYF PGSHLFDPKT 721 VAGLLPNPFL DTSHIPRAFN //