LOCUS CCD69762.1 846 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Homeodomain-interacting protein kinase 1 protein. ACCESSION BX284606-914 PROTEIN_ID CCD69762.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="hpk-1" /locus_tag="CELE_F20B6.8" /standard_name="F20B6.8b" /note="Partially confirmed by transcript evidence" /db_xref="WormBase:WBGene00001994" intron_pos 53:0 (1/7) intron_pos 74:0 (2/7) intron_pos 133:0 (3/7) intron_pos 316:2 (4/7) intron_pos 359:2 (5/7) intron_pos 606:1 (6/7) intron_pos 767:2 (7/7) BEGIN 1 MPKRKNSGQS TDLNSRSPKT IDEALRILAP PQALLVQSQL NLTAPANPFS IQKAPGTSSD 61 NEQRAPKRRA DEEAVNAVPK NLLTTSSTFA RAVIPAAPAI SSANNKMAPQ SVTATAKTTT 121 NRGKVSGEGE YQLIKNEVLC SPYGNQYEVL EFLGKGTFGQ VVKAWKKGTS EIVAIKILKK 181 HPSYARQGQI EVSILSRLSN ENSEEFNFVR AFECFNHKSH TCLVFEMLEQ NLYDFLKQNK 241 FMPLPLNAIR PILFQVLTAL LKLKSLGLIH ADLKPENIML VDPQQQPYRV KVIDFGSASH 301 RSKAVTNTYL QSRYYRAPEI ILGLPFNESI DMWSLGCVIA ELFLGWPLYP GSSEYDQIRF 361 IIQTQGLPPT SMLESASKLH RFFKEVKSES PNHTNVGGSY YRLKTVEEYE ASSSTAKSKE 421 TRKYIFNVID DISRVCYGFE SDPVEHLCDR IDRQEFVDVL KKMLVLNPDF RITPAEGLES 481 KFVTMTHING YNFANYVHEA HKRMEICRKP GPAMATPYRA ANVATPITPV EKPPAPKLQQ 541 PMIAVLPQLN QIAATNIPPV PTQPDLTNLM HHYSQMAAAT GSAATAAQFF YQPLPPAPLF 601 QYAQLHHPFA ARPPHFLSLA TPSHMVPQFV PVPIMDPSML QGQWPPGAAQ QFAVLANDIM 661 RVPAPQGINQ MFASTPQTFS LPQFLSSSIP SATTAFNGNA PNIPFPEENS SWALGTAAQQ 721 QQQQAQRAQS MINGNVKVKP LAAQPKKNSP APSVITLSSD EDSNGAGSSN SGSTTRTGAV 781 NPVRNDTLPM GNTIKTEDIL VPPTTFDGQL PNLQYFPGSH LFDPKTVAGL LPNPFLDTSH 841 IPRAFN //