LOCUS CCD69761.1 821 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Homeodomain-interacting protein kinase 1 protein. ACCESSION BX284606-915 PROTEIN_ID CCD69761.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="hpk-1" /locus_tag="CELE_F20B6.8" /standard_name="F20B6.8a" /note="Confirmed by transcript evidence" /db_xref="WormBase:WBGene00001994" intron_pos 28:0 (1/7) intron_pos 49:0 (2/7) intron_pos 108:0 (3/7) intron_pos 291:2 (4/7) intron_pos 334:2 (5/7) intron_pos 581:1 (6/7) intron_pos 742:2 (7/7) BEGIN 1 MNFHFTLDND RKRRRSLSID IDINFNDKAP GTSSDNEQRA PKRRADEEAV NAVPKNLLTT 61 SSTFARAVIP AAPAISSANN KMAPQSVTAT AKTTTNRGKV SGEGEYQLIK NEVLCSPYGN 121 QYEVLEFLGK GTFGQVVKAW KKGTSEIVAI KILKKHPSYA RQGQIEVSIL SRLSNENSEE 181 FNFVRAFECF NHKSHTCLVF EMLEQNLYDF LKQNKFMPLP LNAIRPILFQ VLTALLKLKS 241 LGLIHADLKP ENIMLVDPQQ QPYRVKVIDF GSASHRSKAV TNTYLQSRYY RAPEIILGLP 301 FNESIDMWSL GCVIAELFLG WPLYPGSSEY DQIRFIIQTQ GLPPTSMLES ASKLHRFFKE 361 VKSESPNHTN VGGSYYRLKT VEEYEASSST AKSKETRKYI FNVIDDISRV CYGFESDPVE 421 HLCDRIDRQE FVDVLKKMLV LNPDFRITPA EGLESKFVTM THINGYNFAN YVHEAHKRME 481 ICRKPGPAMA TPYRAANVAT PITPVEKPPA PKLQQPMIAV LPQLNQIAAT NIPPVPTQPD 541 LTNLMHHYSQ MAAATGSAAT AAQFFYQPLP PAPLFQYAQL HHPFAARPPH FLSLATPSHM 601 VPQFVPVPIM DPSMLQGQWP PGAAQQFAVL ANDIMRVPAP QGINQMFAST PQTFSLPQFL 661 SSSIPSATTA FNGNAPNIPF PEENSSWALG TAAQQQQQQA QRAQSMINGN VKVKPLAAQP 721 KKNSPAPSVI TLSSDEDSNG AGSSNSGSTT RTGAVNPVRN DTLPMGNTIK TEDILVPPTT 781 FDGQLPNLQY FPGSHLFDPK TVAGLLPNPF LDTSHIPRAF N //