LOCUS CCD69445.2 727 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Zinc metalloproteinase nas-38 protein. ACCESSION BX284606-113 PROTEIN_ID CCD69445.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="nas-38" /locus_tag="CELE_F57C12.1" /standard_name="F57C12.1" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00003554" /db_xref="EnsemblGenomes-Tr:F57C12.1" /db_xref="WormBase:WBGene00003554" intron_pos 49:2 (1/16) intron_pos 76:0 (2/16) intron_pos 115:0 (3/16) intron_pos 147:2 (4/16) intron_pos 191:0 (5/16) intron_pos 225:0 (6/16) intron_pos 261:1 (7/16) intron_pos 305:0 (8/16) intron_pos 361:0 (9/16) intron_pos 392:1 (10/16) intron_pos 476:0 (11/16) intron_pos 554:0 (12/16) intron_pos 585:2 (13/16) intron_pos 610:1 (14/16) intron_pos 645:2 (15/16) intron_pos 683:2 (16/16) BEGIN 1 MPSPSYNRHI IIASCFCCLL IFSSAARVPK ASKKHLARVK QLLNDEAERH NTLIQSDSVT 61 VFDDIQRNPN TGVHHDELAV NNADEYFQGD VDLSEQQVKI IEDQFTQGKR EKRKIGRNPL 121 YKKWDTRGPI SFDYAESIPF QTRQKIRSAM LLWQQHTCLR FEEGGPNVDR LEFFDGGGCS 181 SFVGRVGGTQ GISISTPGCD VVGIISHEIG HALGIFHEQA RPDQERHIAI NYNNIPLSRW 241 NNFQAVGENH AETYNLPYDT GSVMHYGPYG FASDPYTPTI RTLERVQQST IGQRAGPSFL 301 DYQAINMAYG CTESCADLPC LRNGYTHPNN CSMCACPEGL SGRYCEQVYP SNAQCGGVIF 361 ATKEVKYITS PNYPDKFPID TECNWIIAAP IEGRVFMEFE GDFDFLCEDT CDKAYVEVKY 421 HSDKRLTGAR YCCSLLPKNR FISFKNEMII IMRGYRSSGA GFKAKFWSNL GEPEGVSTPL 481 PPTTAPLPEI SETTQKPEPT TVQSTTTYTT AIPRRTAKKQ FFTRKPITIP LTPLTSSSTT 541 TESTTVSSTT QSTTWLPTEP SFATGETEIT TASPTITLFP SLSTILPPIN SLAGVLPSTQ 601 APDIINSVLE CGCGAWSEWQ GECSQQCGGC GHRLRKRECK KEACRKEEKR PCNFSACPDG 661 TNFLINNAEF HILWRGCCVG LFRSGDQCSA LETESNPFFK IINSLLNIQD AKNNDTLIAK 721 RMMRGEH //