LOCUS CCD69439.2 1141 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Intermediate filament protein ifc-2 protein. ACCESSION BX284606-132 PROTEIN_ID CCD69439.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="ifc-2" /locus_tag="CELE_M6.1" /standard_name="M6.1a" /note="Confirmed by transcript evidence" /db_xref="WormBase:WBGene00002056" intron_pos 23:0 (1/15) intron_pos 68:1 (2/15) intron_pos 105:1 (3/15) intron_pos 177:2 (4/15) intron_pos 244:1 (5/15) intron_pos 284:0 (6/15) intron_pos 368:1 (7/15) intron_pos 399:0 (8/15) intron_pos 619:0 (9/15) intron_pos 653:1 (10/15) intron_pos 708:0 (11/15) intron_pos 745:0 (12/15) intron_pos 910:0 (13/15) intron_pos 966:0 (14/15) intron_pos 1019:0 (15/15) BEGIN 1 MSLTSTPFST DDERYSGYTN SAMSPPLQKQ LIQEVSLSYS APYTSTVKPS RHDLPLAFSP 61 YSLDSEIEDL HSHTYSQLSN RSNGNKVESA ERIYTASRKE TEFPAKADPI PYFSAQSAIK 121 AGRESPSYTT RSTPTPRQTP ISFDQASTAR LDSGLSQNLI VSESTTFEEL TTITTSNNRT 181 TRKKEIKTEM PTVNALTKQF EISSQQEKVV PLKPRKSSNV DYNGNGNSRS RVVVIDKSQM 241 KSHKNGTYTP NRSAIVYSPG GILTTTIVDI EPARFGRRTE EYKIQEEYIV QRYDNGSSPN 301 YQRQEQGYQQ QQQHRSREYK THRQEKQENY NQRSYSATEN REVDAPVDTS PIDVVKNVID 361 RWETKIGGTT TRFYASDQQL RSVSRVDMND NVPRSAQEKI IVHQRSESQP TERVIPISPL 421 PHRVEPTRTT QSGGLLQTYE ELKTVVVKQS SDQTPQKIVP RAQSPVTSPV FKETILSPPP 481 IPTPSPTSDI AEEVLRTDET TQHTAITMHS IVTKEVKQEA KEKINSVTDN AEMKEKVVEI 541 AKNVEYEWEK KPLTPTPTPI PPQQQEVKQE ELKVENKIEN DQNEVHLHKF LDRDYRIKTY 601 EEYSTTKRLR DRSQPPERPP TSYSSYSDRS RSIDRTYERR VLGSGMSRTY SEGRGLASGT 661 YASGFGQLVS GMSSAGAICT TQIRDARERE KREIGLLNDR LADYIEKVRF LEAQNRCLSH 721 DIDILRNGFS GGGHVSGLFD AEINQAKHIL EQTTAHRSTF ERDITGLSAE IEVFRKKWLD 781 AVNAVKAHRE DHDVDLDRLA KIEAEISLFK RKIRIVEEDV IRIRRENDGI YNEIARIKQL 841 THNEIALKNE RSLNVSDLLQ RINLLQTENN VRIEQELVFI RRDTTADNRD YFRHELQAAI 901 RDIRADYEAI SIRNRQDIEV WYREQIRKIQ DESVRVNPDL YKEELISIRT TVTNVRSRLA 961 EVEGRNFFLE RLIDDLKNNE EAKFFEISLA ERDAQIATLR DQCTELSIQM EKLCDNEISL 1021 RAEIERYRIL LNGANVTTYT SNTHGSGSGI AVGGVVGGST RVISQTTRTH SSSNTSYSNV 1081 PASRGGYSIS GNVGGISVGG TIGSHGASAH ATGGIIGSGV QAHRGSGTYQ QSHHSYSSSN 1141 H //