LOCUS       CCD69439.2              1141 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Intermediate filament protein ifc-2 protein.
ACCESSION   BX284606-132
PROTEIN_ID  CCD69439.2
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="ifc-2"
                     /locus_tag="CELE_M6.1"
                     /standard_name="M6.1a"
                     /note="Confirmed by transcript evidence"
                     /db_xref="WormBase:WBGene00002056"
     intron_pos      23:0 (1/15)
     intron_pos      68:1 (2/15)
     intron_pos      105:1 (3/15)
     intron_pos      177:2 (4/15)
     intron_pos      244:1 (5/15)
     intron_pos      284:0 (6/15)
     intron_pos      368:1 (7/15)
     intron_pos      399:0 (8/15)
     intron_pos      619:0 (9/15)
     intron_pos      653:1 (10/15)
     intron_pos      708:0 (11/15)
     intron_pos      745:0 (12/15)
     intron_pos      910:0 (13/15)
     intron_pos      966:0 (14/15)
     intron_pos      1019:0 (15/15)
BEGIN
        1 MSLTSTPFST DDERYSGYTN SAMSPPLQKQ LIQEVSLSYS APYTSTVKPS RHDLPLAFSP
       61 YSLDSEIEDL HSHTYSQLSN RSNGNKVESA ERIYTASRKE TEFPAKADPI PYFSAQSAIK
      121 AGRESPSYTT RSTPTPRQTP ISFDQASTAR LDSGLSQNLI VSESTTFEEL TTITTSNNRT
      181 TRKKEIKTEM PTVNALTKQF EISSQQEKVV PLKPRKSSNV DYNGNGNSRS RVVVIDKSQM
      241 KSHKNGTYTP NRSAIVYSPG GILTTTIVDI EPARFGRRTE EYKIQEEYIV QRYDNGSSPN
      301 YQRQEQGYQQ QQQHRSREYK THRQEKQENY NQRSYSATEN REVDAPVDTS PIDVVKNVID
      361 RWETKIGGTT TRFYASDQQL RSVSRVDMND NVPRSAQEKI IVHQRSESQP TERVIPISPL
      421 PHRVEPTRTT QSGGLLQTYE ELKTVVVKQS SDQTPQKIVP RAQSPVTSPV FKETILSPPP
      481 IPTPSPTSDI AEEVLRTDET TQHTAITMHS IVTKEVKQEA KEKINSVTDN AEMKEKVVEI
      541 AKNVEYEWEK KPLTPTPTPI PPQQQEVKQE ELKVENKIEN DQNEVHLHKF LDRDYRIKTY
      601 EEYSTTKRLR DRSQPPERPP TSYSSYSDRS RSIDRTYERR VLGSGMSRTY SEGRGLASGT
      661 YASGFGQLVS GMSSAGAICT TQIRDARERE KREIGLLNDR LADYIEKVRF LEAQNRCLSH
      721 DIDILRNGFS GGGHVSGLFD AEINQAKHIL EQTTAHRSTF ERDITGLSAE IEVFRKKWLD
      781 AVNAVKAHRE DHDVDLDRLA KIEAEISLFK RKIRIVEEDV IRIRRENDGI YNEIARIKQL
      841 THNEIALKNE RSLNVSDLLQ RINLLQTENN VRIEQELVFI RRDTTADNRD YFRHELQAAI
      901 RDIRADYEAI SIRNRQDIEV WYREQIRKIQ DESVRVNPDL YKEELISIRT TVTNVRSRLA
      961 EVEGRNFFLE RLIDDLKNNE EAKFFEISLA ERDAQIATLR DQCTELSIQM EKLCDNEISL
     1021 RAEIERYRIL LNGANVTTYT SNTHGSGSGI AVGGVVGGST RVISQTTRTH SSSNTSYSNV
     1081 PASRGGYSIS GNVGGISVGG TIGSHGASAH ATGGIIGSGV QAHRGSGTYQ QSHHSYSSSN
     1141 H
//