LOCUS CCD69408.1 1609 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Protein transport protein sec16 protein.
ACCESSION BX284606-1928
PROTEIN_ID CCD69408.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="sec-16A.2"
/locus_tag="CELE_F13B9.1"
/standard_name="F13B9.1c"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00017419"
/db_xref="EnsemblGenomes-Tr:F13B9.1c"
/db_xref="GOA:H2KZQ9"
/db_xref="InterPro:IPR024298"
/db_xref="InterPro:IPR024340"
/db_xref="InterPro:IPR024880"
/db_xref="UniProtKB/TrEMBL:H2KZQ9"
/db_xref="WormBase:WBGene00017419"
intron_pos 79:1 (1/14)
intron_pos 131:0 (2/14)
intron_pos 262:0 (3/14)
intron_pos 303:0 (4/14)
intron_pos 371:0 (5/14)
intron_pos 430:2 (6/14)
intron_pos 792:0 (7/14)
intron_pos 827:2 (8/14)
intron_pos 962:0 (9/14)
intron_pos 1071:0 (10/14)
intron_pos 1140:2 (11/14)
intron_pos 1223:2 (12/14)
intron_pos 1320:2 (13/14)
intron_pos 1544:1 (14/14)
BEGIN
1 MSFYWQQGLP NQQDTGQQSQ QPAQQGQWDF INLGGAPAPQ HQWNPATQQQ NNYYYHQQPA
61 APPQQHTNPQ QPPQQQYNVP TNSHQTAEQN YQQQWAQQQY QNQAQPQPPQ QPSLSSQQIQ
121 HQPQLPKAKK APKVQTNTQQ QVQQNFNPTP PVLTTSQKPG NTQQDYYYSQ QQHTQQNVYQ
181 TNHVHPEETQ VVAQALQPTA ESTYFPPPPV QQVGSAPPSK EVTPERHFTA AAPAPHVEQV
241 ALVPTPPTLA PKSQAPNTAK KAEHLTVTAP IAAETPKTKV TPTSSEDDWE KADMEVQRVE
301 DENKRQKAVP STAVSEKPEE SRESSSLGGS WSQQDTEPSE RSSVEPEILE HPVKSESDKE
361 EKTPRVSMSE FPNHETTPTI VTMSVSTNED RQKTPEAGNL SQNTSIVLNT TDSPLEAIAT
421 STPKEIKPEK RSSVSSQGTI GAEKTKAKKK NKDEAVSSMF KRPDQFSENG EASGNNSDST
481 MASGRPDFER GHARASYREY KKTYKEIIDR LKMMRTDSHR PDFRPASKLA NPLLAAAGLS
541 RLHPAIRRES AGGRNDGRTS VPLHHSHSFT EHMYHDQNGG RRSRVSRLDP NARPSSRQAT
601 GYQTANQSYN HYDQHNHSYQ HQQMQHRGRH SALGVPFDAR RTPSSYIRTF SGEYGQEPQE
661 TSSISENEDD GDNVESDDEL RGFNMERQHE RRGYNNAQYQ EVQCPIEEDG SALYYCGVVH
721 VNMDIWRRIT QSYQIPAEFN ELKPIEKAAY IFYAVIHKQP CRNLDTFRKQ FNFYFYKYGM
781 EGDSDDDALF KVCRTMQNHY IERQREKERA NQNMMSTLFS DDTSIDGQSD MNSVCEESLN
841 AYDIYNNGPL KFTCPHSFMN ISTGGQIISI RPDQSISAVV FDDIKSVLKD VPTLQVKDAA
901 MTFKGPLIPH QSAPHTVRLY ITKQIENIKN SAVAIENPEA NDVVESLLIW QLLETMVKQQ
961 GNITGPDIAE LLAKVASQPV QIEAPPQQAN IAPALTQFTK FLLGGHIDEA VESALRNGLF
1021 ADALVLTRRL FPNDERRIEQ IESRFLQTRS MSNPVTTLVS VAKGESPPVL TNPPLDDHLS
1081 WGTHAAIILA NLDQRGPAMN TIYQLGRALA KRDYHSAADF CFLVCGVLGG TNPFEPIATP
1141 EGEEDYRRHI SLVNSDIPDN ESNPKCQYGF LLTDLHATEI FDYALRLKAD RESPLTKSVE
1201 YQTARIKYAK LLANHGFNTD AYRYCTEVAR AIWNNLYLFK ADDLLELCDL AESLQYAASV
1261 NPSESQWIHD LRTTVQAGFV YTPQPTQTVK HLENKPVPSV HQGYDLQSNA QDDPEVPREP
1321 VQHVPITQNV IDPVPTHSAF TPTIQPKDPE LSHPPQNQVY REEPPHIPPT PTPSVHQEQH
1381 YQQFDQSFSQ SLTQQAQEDG FMTPPDYSDG PLTMASSPPT LPPVQSVPVS SKPAPPSAEN
1441 QAQNSTSPQQ PTQEQGQETQ DRNPDQGGWL KSIQSTVQNT VQKATGRNPM NLPEDRNPSI
1501 VWDSTQNKYV GAGVEQEPVA PPPPMAQAGP APPVGGGGLR AARASRYARV GGTSSSASQA
1561 PAGMMAPAPP TANFGFIPAP VDNDNDSVDP FSGQANPTIM QSAPMSSDE
//