LOCUS CCD69248.1 1035 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans SPK domain-containing protein protein. ACCESSION BX284606-701 PROTEIN_ID CCD69248.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="K09C4.10" /locus_tag="CELE_K09C4.10" /standard_name="K09C4.10" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00019554" /db_xref="EnsemblGenomes-Tr:K09C4.10" /db_xref="UniProtKB/TrEMBL:Q21380" /db_xref="WormBase:WBGene00019554" intron_pos 20:0 (1/13) intron_pos 65:1 (2/13) intron_pos 124:2 (3/13) intron_pos 152:0 (4/13) intron_pos 197:2 (5/13) intron_pos 263:1 (6/13) intron_pos 322:2 (7/13) intron_pos 354:2 (8/13) intron_pos 751:2 (9/13) intron_pos 813:2 (10/13) intron_pos 866:1 (11/13) intron_pos 948:1 (12/13) intron_pos 975:1 (13/13) BEGIN 1 MSANWDLILR SSADKEDLKR EMTYVSYHMD LGNGINKELR FSLNNKNTYV THYMLEKLPR 61 PSILKLADDM LLARMSYISK IFNEYKRSRG KFNFLGALCF INEYLSDNDL TGEFEYQNFS 121 GKNAWAEPKR VIDGVAEYKK ITKTREQLFD EFPVPGYDWL FSNKLDSPNE CGELEAAHRA 181 RRQRLIFGKD LPKPAEWDYD NWRENFLEAQ GDKIPIQESQ PSSKELICSF LGMHSVDKYR 241 EFRIRYTTEM MNFKVDDYTA LAEEVKSLMR AREEVSREKF LWATSRLCVN ENTVKYFYAM 301 FKQGVKALER YETENMNEEV TDWSEPKPLA KFYKFFNKTL HYETTVPAPP TEKIILETHQ 361 SGIDFMNSFK QSAQQEVAPT SLVFTSAPLT ENDIFPVAYG SENHIAEKRE DGTIEKGSDT 421 KIEQNISNGS SRIDDTVEAT DNVPTLVNTT PTEQTKPTLS YAKIVEKFSK TDQQPAKSDN 481 SSPSPRAQRL EQNLATSANT IPCLSGNSEN SENSYAPKHD NAENVGEWKE VVSKATTSNS 541 NKKGKSKSIG QKQKETTQDV GKMGITKSEE RYDGNGNEHQ KSDFNISKGS SESENGDSLK 601 SAKKKKASEF TTLDANKYNI EKEKDFPSTP AEEYSASSTD KEEVSKPTKT SIKKAKKAAK 661 AAKREQGKGK DNATESTIEK LVMIADDNSF VEAKFDVQIV KSNDKEPINP EEENGKSPME 721 SVEAQFSDGL ATTFVNNALL AAQNLLQMPE TVSHSNIQYT SLPDEPEDEG SDAYVPGQTI 781 THDYRPGVRR HGNGSECSSC SSAHELPSLD DDREGRLSDN NNRESRSAPT YPTLFFDTEF 841 FDARKVNLAK PTPEFVERAC NAALHDMFRR LKYLADKKAN GGLRNVEHGR RPLIQKRLQK 901 FQNVYVFRLR VAKAMLYILD NDVAAESTNI REKNVIKDLL LYIGEPVDSN ADTLKGRKLD 961 RIAEHTRFAD NNESDLITRG LRYIDLRVSE LEQSEPLRAQ YAAIGDRVFA LMKEQEVLLK 1021 IIGNSVDFRG YEEYL //