LOCUS CCD69234.1 767 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Discoidin domain-containing receptor tyrosine kinase B protein. ACCESSION BX284606-711 PROTEIN_ID CCD69234.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="ddr-2" /locus_tag="CELE_F11D5.3" /standard_name="F11D5.3b" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Tr:F11D5.3a" /db_xref="GOA:Q95ZV7" /db_xref="InterPro:IPR000421" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR008266" /db_xref="InterPro:IPR008979" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR020635" /db_xref="UniProtKB/Swiss-Prot:Q95ZV7" /db_xref="WormBase:WBGene00017381" intron_pos 28:2 (1/12) intron_pos 61:1 (2/12) intron_pos 106:0 (3/12) intron_pos 155:1 (4/12) intron_pos 252:0 (5/12) intron_pos 356:1 (6/12) intron_pos 445:2 (7/12) intron_pos 469:2 (8/12) intron_pos 545:1 (9/12) intron_pos 588:2 (10/12) intron_pos 614:2 (11/12) intron_pos 717:0 (12/12) BEGIN 1 MSNRKIRDEQ ISASSSFDLQ STGPQHARAH QESGSGAWCP KNQINSLSKE WLQISFSVDT 61 VITSVETQGR FDDGRGMEYA TAFKIQYWRP SLNAWASYKD DFELETIPAN NDTEHAIRRH 121 LDRAIIARRI RIVPVSNSTR TVCMRVEVFG CPFDDSLVFY NVDQGDLQSG ISYHDFSYDG 181 NLANSPHLTG GIGKLYDGEV GKNNVFVNHH KWVGWRRKRN GNVKLAFEFS ELRNISGILI 241 HTSNEFKKSA KAFSSATVLF SINGKDFSDT IVHFNNPEDT ESEVPRWIRI PVNNRIAKVA 301 KIRLNFGTDS DWLFISEVNF ESNHTNIELL NDDVVIPDSV SYFSVTEHDD GTSMFAFIIF 361 FFMFLIVAVI ILTVLYRKRE YRVKASSPSP NAKREILLTI DGNTIKHHVS PSTYQMARDN 421 LQNALIEKMP MSPIISDYAE PDISVCSDVT ANTPLLYGID GPYDTQKRSN PLSSMVKYSD 481 YGEVYCTTLP EIARDKLICV SRIGQGEFGE VDLCQLENRK VAVKKLHGIS QADEFSFHRE 541 IRVLGSLKHP NVVEVVGVCT IQKPILCIME YMENGDLKSY ILKNPTIQTS QCISICTQLA 601 AGLAYLESCN FVHRDIAARN CLVDGEGNVK IADFGMARSL YSQEYYKVEG KFVLPIRWMA 661 WEALLLGKFS TASDVWGFGV TMWEIFSLCS EKPYSDMTDD DVVENLQSMS STGSLKQVLS 721 RPRMCPSKLY NEQILPCWNY ESSRRPSFEN VHLHLQSLVH TSPHIHF //