LOCUS CCD69233.1 797 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Discoidin domain-containing receptor tyrosine kinase B protein. ACCESSION BX284606-710 PROTEIN_ID CCD69233.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="ddr-2" /locus_tag="CELE_F11D5.3" /standard_name="F11D5.3a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00017381" /db_xref="GOA:Q95ZV7" /db_xref="InterPro:IPR000421" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR001245" /db_xref="InterPro:IPR008266" /db_xref="InterPro:IPR008979" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR020635" /db_xref="UniProtKB/Swiss-Prot:Q95ZV7" /db_xref="WormBase:WBGene00017381" intron_pos 23:1 (1/13) intron_pos 58:2 (2/13) intron_pos 91:1 (3/13) intron_pos 136:0 (4/13) intron_pos 185:1 (5/13) intron_pos 282:0 (6/13) intron_pos 386:1 (7/13) intron_pos 475:2 (8/13) intron_pos 499:2 (9/13) intron_pos 575:1 (10/13) intron_pos 618:2 (11/13) intron_pos 644:2 (12/13) intron_pos 747:0 (13/13) BEGIN 1 MKLLLYLFGV TFHSNTVVAL ELRECSHQLG MSNRKIRDEQ ISASSSFDLQ STGPQHARAH 61 QESGSGAWCP KNQINSLSKE WLQISFSVDT VITSVETQGR FDDGRGMEYA TAFKIQYWRP 121 SLNAWASYKD DFELETIPAN NDTEHAIRRH LDRAIIARRI RIVPVSNSTR TVCMRVEVFG 181 CPFDDSLVFY NVDQGDLQSG ISYHDFSYDG NLANSPHLTG GIGKLYDGEV GKNNVFVNHH 241 KWVGWRRKRN GNVKLAFEFS ELRNISGILI HTSNEFKKSA KAFSSATVLF SINGKDFSDT 301 IVHFNNPEDT ESEVPRWIRI PVNNRIAKVA KIRLNFGTDS DWLFISEVNF ESNHTNIELL 361 NDDVVIPDSV SYFSVTEHDD GTSMFAFIIF FFMFLIVAVI ILTVLYRKRE YRVKASSPSP 421 NAKREILLTI DGNTIKHHVS PSTYQMARDN LQNALIEKMP MSPIISDYAE PDISVCSDVT 481 ANTPLLYGID GPYDTQKRSN PLSSMVKYSD YGEVYCTTLP EIARDKLICV SRIGQGEFGE 541 VDLCQLENRK VAVKKLHGIS QADEFSFHRE IRVLGSLKHP NVVEVVGVCT IQKPILCIME 601 YMENGDLKSY ILKNPTIQTS QCISICTQLA AGLAYLESCN FVHRDIAARN CLVDGEGNVK 661 IADFGMARSL YSQEYYKVEG KFVLPIRWMA WEALLLGKFS TASDVWGFGV TMWEIFSLCS 721 EKPYSDMTDD DVVENLQSMS STGSLKQVLS RPRMCPSKLY NEQILPCWNY ESSRRPSFEN 781 VHLHLQSLVH TSPHIHF //