LOCUS CCD69230.1 812 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans PH domain-containing protein protein.
ACCESSION BX284606-713
PROTEIN_ID CCD69230.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="F11D5.1"
/locus_tag="CELE_F11D5.1"
/standard_name="F11D5.1a"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00017380"
/db_xref="UniProtKB/TrEMBL:H2KZQ0"
/db_xref="WormBase:WBGene00017380"
intron_pos 15:0 (1/18)
intron_pos 38:1 (2/18)
intron_pos 59:1 (3/18)
intron_pos 109:2 (4/18)
intron_pos 134:1 (5/18)
intron_pos 156:0 (6/18)
intron_pos 244:0 (7/18)
intron_pos 331:1 (8/18)
intron_pos 367:2 (9/18)
intron_pos 402:0 (10/18)
intron_pos 422:1 (11/18)
intron_pos 512:1 (12/18)
intron_pos 595:0 (13/18)
intron_pos 616:0 (14/18)
intron_pos 645:0 (15/18)
intron_pos 717:0 (16/18)
intron_pos 789:1 (17/18)
intron_pos 808:2 (18/18)
BEGIN
1 MDCNGNIAEN PFLKQDNAAK RLIRRRPIII RDTDTKKSDT GFKMKSSEVG GNLESPNSDL
61 EYGPGIVEKL RAKFSKMSGA QKQQNVYANV QTKNYSSCDD LLSEADTFQT VSNISHAQSE
121 LQRRTSRSIS DMLDNDEIGK PLAISQNVEL KEEEETKSIS QLRRRFEKNG EHAKMRFARD
181 PAQLISRFQP DHLDQWRSNT ELNKTPVTHT TSAFIAHSNK PTPVLKPVEV QTQTQHKTAN
241 VLKVLNDADT NKSEPEFVQI ARRLRRFQPE IHDTFANVTN VSSNTNVTTT TTTINNNNNN
301 NIHINSSYSL KATTLPPTPT HAAPVRPATL SMWQRKQPDI PQYSEAAKII RETCDIAVLP
361 SDPHSARVSI QPIPSIISEN SSRSTTPVKA SPPPEEPKPN VLETYAQYRK TVVDISSTDR
421 TSAVNSVFKY DNLSPAVKSP ISSNLWKPTI NSPTMSTTES TISPVASSPT ASKLPFVSRK
481 VDDVGAKSMI TSSNVVSISV KAPVSNRIYS NYDKTDETTT DSMRSTAPLK PPITYSPSYT
541 STSLNSVSLS SKYVEEKSKT SQGSTAPVVP SNSLSGLLSP REKPYGDDVT ILKSEPTNET
601 QKLAEPSATN IVNQQDESDD NSDGDSRDGN DSYDITPMRP NSLVFTRLAN EEEMGGDGNV
661 ISRSLLSLVA EEDLPDFLVA LNEKPIRYVV VEESEKPSTS SILRSRDARK EEKVQKGSTR
721 IRFCTDNAMA YAYLDEITAT RSLQWDDGTV IEYSYFKDLE AAEEAAMAHN DPTLALIEQW
781 EQQIANDNIH PLTHDLTFSD SCLETSAVSS AY
//