LOCUS CCD69094.2 2596 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans VWFA domain-containing protein protein.
ACCESSION BX284606-334
PROTEIN_ID CCD69094.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="K06A9.1"
/locus_tag="CELE_K06A9.1"
/standard_name="K06A9.1b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00019435"
/db_xref="EnsemblGenomes-Tr:K06A9.1b"
/db_xref="GOA:Q8IFX6"
/db_xref="UniProtKB/TrEMBL:Q8IFX6"
/db_xref="WormBase:WBGene00019435"
intron_pos 38:1 (1/13)
intron_pos 76:0 (2/13)
intron_pos 104:0 (3/13)
intron_pos 132:2 (4/13)
intron_pos 158:2 (5/13)
intron_pos 222:1 (6/13)
intron_pos 1731:1 (7/13)
intron_pos 2403:1 (8/13)
intron_pos 2413:1 (9/13)
intron_pos 2440:0 (10/13)
intron_pos 2504:2 (11/13)
intron_pos 2530:2 (12/13)
intron_pos 2557:1 (13/13)
BEGIN
1 MKVPRGIGLV FIFAVAAALV AGLILTIVLV SRPSPAEPFT GRVITVGICN SGSEPSKASS
61 FRFKRDATTS CSFDANRDQL KNFLSSSAAD TSFIVMSYSD KPSPSTVLPR DQAIELLNSM
121 KKDGSKTIQQ APAFASYDPK AYENSDLVFF TPCKTDYTGY DADMAAVRTT INNVQTKKYV
181 IVSLAMDQGN MTQKYGDLNT HNIGNNATDI TNDINNVLNI TATTLGPTTT TITPTTTVVP
241 ASTSTQPAPA SSPTTQPAPA TSPTTQPAPA TSPTTQPAPA TSPTTQPAPA TSPTTQPAPA
301 TSPTTQPAPA TSPTTQPAPA TSPTTQPAPA TSPTTQPAPA TSPTTQPTPA TSPTTQPTPA
361 TSPTTQPTPA TSPTTQPAPA TSPTTQPAPA TSPTTQPAPA TSPTTQPAPA TSPTTQPAPA
421 TSPTTQPAPA TSPTTQPAPA TSPTTQPTPG TSPTTQPAPA TSPTTQPSPA TNPTTQPSVS
481 SSASTQPAPA TSGTTQPAPA TSATTQPAPA TSATTQPAPA TSPTTQPAPA TSATTQSVPV
541 VTTQTTMGTS PTTAGISSSP AATSPSTAVT SPSSLGTSSS PLPSSISTSA LPIASSSASS
601 SPSAASSTTP VVLSSSTIQS SSGTFPSSVA SSPSTVGSTS GAASSSSYAT VSTIAGSTGS
661 TITPVPGSSS TIGSSTPSAS SSSSGTMSTI SGSTGSTVTV VPGSSSTFAS STPIASSSSP
721 GSTVTVAPGS SSTYGSSTPS ASSSSSGTMS TNSGSTGSTV TVAPVSSSTF GSSTPIASSS
781 SSGSTVTVVS GSSSTYGSST PSASSSSAGT ASTISGSTGS TATIVPGSSS SVGSSTQSAS
841 PSSPGTMSTV SGPTGSTVTV VPGSSTSPAP SSSPNPSSSP ASTGSTITIS GSSSIIVSTV
901 SGSTVSGSTG TSQSTLASST ATPGSSSTVP SSSSPQPSSQ SPAPNTGSTT PSQTSSQSPS
961 PSMNPSSSTP TGSSQSTITP EGSTASSPTG STGSTFSVAT EVTSQSTVPS GSSLGTQSTN
1021 SSPSPSSLSP STSGMSTLTS EPSPSSTQSS GAQSTLTTPS PNPSQSTSSL ESSTSGATTS
1081 SGSAGTTMTS PSQSSSVGSS QGSTSPAAST TSGEMTSQGS TQTPGSSVST SAAILTSTQQ
1141 SVSTNSPGST VTRPSTVSGS TSSGSTVTVG STEASTSGSS VASSSPAPST SQNPNPSTSS
1201 GSSMITQSPY PSQSTSPVES STTPSPGSPG TTLTSTSPSP SQSTTIGSTQ GSTSPGISTT
1261 SEEMTSQGST QTPGSTGSTV TQPSTVSDST SSGSTVTVGS TEGSSSPIPS TSQNTNPSTS
1321 SGSSMSTQTP QSSQSTSPVE SSTSGATSSS GSPGTTLTSI SPSPSPSSTI GSSQGSTSPV
1381 VSTISQGSTE TPGSTGSTVT KPSTVSGSAS SGSTATMGST EASSTSGSSF PTMSSNSPVP
1441 STSQSPNPST SGGSSTSPNP SQSTSPSTSG ATSSPGSSGT TLTSISPSPS QSSTIGSSQG
1501 STSPVVSTTS GDMTSQGSTQ IPGSTGSTVT QPSTGSGSTS TSGEITSQGS TQTPRSSLST
1561 SPAISTSTQQ SVSTNSPGST VTQPSTVRGS TSSGSTVTTG STEGSSTSGS SSATSLSSSS
1621 PVPSTSQSPN PSTSGSSTPT PNPSQSTSPV VSTTTGEMTS HGSTQTPSTI GSTVTQPSTV
1681 SGSNSSGSTV TIGSSEASTS GSSFKTSPSS ISPVPTSSPI PSTTFASSTS GSTISDVSSV
1741 STTSLAPLSS SLPSTVPSST QSFSSTSEGS SKASSSPVPS QTSSTPTNPT GSTESSTLLS
1801 STISGSTQHT TMSKASSGST SPSTNSQTGS TVTMGSSSTS GVSTSSASST QPQMSTSQGS
1861 SAGSTVASST ASPAASSTAP SSTGTMSSTS SGTVGSTISE SSTTASASSQ TGSTVTMGSS
1921 STSGVSTSSA SSTQPQMSTS QGSSAGSTVA SSTAGLVSTS TVPSSTGTMG STSSGTVGST
1981 ISESSTTASA SSQTGSTVTM GSSSTSGVST SSASSTQPQM STSQGSSAGS TVASSTTGLV
2041 STSTVPSSTG TMGSTSSGTV GSTISESSTA ASASSQTGST VTMGSSSTSG VSTSSASSGQ
2101 PQMSTSQGSS AGSTVVSSTA SPAASSTAPS STGTMSSTSS GTVGSTMSQS STAASTTSHT
2161 GSTVTLGSSS TSSNQMSTSQ GSSVGSTVAS STAGLVSTST VPSSTGTMGS TSSGTVGSTI
2221 SESSTTASAS SQTGSTVTMG SSSTSGVSTS SASSTQPQMS TSQGSSAGST VASSTAGLVS
2281 TSTVPSSTGT MGSTSSGTVG STISESSTAA STSSQTGSTV TIGSTSGTNP SSPRSLSQIT
2341 ITPSPSQSTE STQTSLPSSS PSPSTHSVSS SEGTTMSSGA TTSGDKMSFL SSTGTTVSFS
2401 SRGSSLATTS APKPSVTCLF MYDTQSKEID QTAINTYKTY FNFALLVASK LNNESILTGY
2461 IDNFGYSAGL NDHQYYPTDD YNGIKSVPFP IDGTDDDIDL DLKDVDKSLA TADWTPPVAD
2521 QTCMIFISAA PEDEYGGTTI KSTYTYFETV VGVLVGGAKS IPGLSIDKNI VITNNTMNDR
2581 DASAVVSKLL ELLPTA
//