LOCUS CCD69035.1 1254 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans DumPY: shorter than wild-type protein.
ACCESSION BX284606-1974
PROTEIN_ID CCD69035.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="dpy-6"
/locus_tag="CELE_F16F9.2"
/standard_name="F16F9.2"
/note="Product from WormBase gene class dpy"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00001068"
/db_xref="EnsemblGenomes-Tr:F16F9.2"
/db_xref="GOA:Q94185"
/db_xref="UniProtKB/TrEMBL:Q94185"
/db_xref="WormBase:WBGene00001068"
intron_pos 35:1 (1/7)
intron_pos 361:1 (2/7)
intron_pos 384:1 (3/7)
intron_pos 477:1 (4/7)
intron_pos 996:1 (5/7)
intron_pos 1046:2 (6/7)
intron_pos 1205:0 (7/7)
BEGIN
1 MRYAWVVSFA FLILGNVVQS SSLLSKTINS DGSRDFKIVK HIKKNTCTCS CKCVPDAPSN
61 PFDVSTTISS INNDNVDIGP SGDSNPTGSS WFQEIEATVG GQTVKSEHNI DSSVEVEKKV
121 TTSTDASTTN APTTGKDSTT PEIITGIVVI NSKSESVTDM STTRFSTTLS PTTELLTSPE
181 TLVSTDSSTS TEQTSPDNTT EIASPMETNT TTEATTTSVE PSVSTLASED ETTVTAIAES
241 TTTVIAEVST TTEEPTTTAE STTKKSTTKA PATTEEPTPT TTEEVTTTEA ETSTTTSSET
301 STEKPTTPLI DNKIAGPATG KPETTHFPVT GTTPNFDTAT ETPFVAKSED KMTLSKTAAT
361 ETTQQTTEVT DGPEKETTKN VSIEIPITTV PLVETTSTTS TASKESDGFH TTLKLKVTTA
421 DSDSTESATT VKPFNEETTT KSHVVPKPTK KGTVKVTPKL ELSFDEPTEI TKAPHPVKPR
481 KTTTTTTSTT TTTEKPVITE GSTTNKQPTT SEHESTTEVP TTTEEPTTTT GQHKTEKAIT
541 TEEPTTTEES STTEEVTTTE EPANTGNPPT TENPTTTEQP TSTAESTTTA LPFTTEQTVT
601 TEEPTTAEKS TATQKPTTTQ ESVSTEKTST TKKASTTEEP TTTDEPTTTT ESSTTGKATT
661 PELSTTSEET TTTELKITTE GSTTTEEPTT TAIFAEASTG IITTDEETTS TTSTTPEITS
721 TKEIVTESAI TQTSVSVVES STPRQLPERW KAIVNKFKHN LEVLKEKKRL LKEKESTSTT
781 GSDSSETTTV VAENIDEVTT TEKEKVVQTT PITTEKSTTQ EETTTTTTTT EKTTSKTTTE
841 KPTTSESATT ETTTSEPSTT ESTTVDTSSA TTEESSTAAE TTTTSAETSE TTTSESAAFI
901 TGESPENTAL QSSSQKSEEN ESSAEKPGAR RDFVPKKHKT TVKPAETTSA VAASTTTTEP
961 ITTTEKSTTL ETTPIEATTL NEVTGPAFVT GAPVDETTIN TLELLSKINN TQISQPKPTD
1021 ISKTDALSSL ISGLIGSFTK APMAPTIHTT TDAAFVTATE ASLNDGSDKK IIDEAQPTDE
1081 IRRAQPTNEM DKEMEFEKRI REQRIQMEQA KRLREEELLE KQLQEQEIEE KARNEMIERK
1141 QKMLQQLEEL KEAEERQRVL LEQERLQEQE RQRLIAEKEA EIAFGSISTT TEASKFKYRL
1201 RPAQCAAINK FTRVFNITDP SEWIQKNCEF AKRYFPEASC PQIQALIESC FAFL
//