LOCUS CCD68976.2 1679 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Receptor-type guanylate cyclase
gcy-12 protein.
ACCESSION BX284602-1865
PROTEIN_ID CCD68976.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="gcy-12"
/locus_tag="CELE_F08B1.2"
/standard_name="F08B1.2a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00001538"
/db_xref="EnsemblGenomes-Tr:F08B1.2"
/db_xref="WormBase:WBGene00001538"
intron_pos 74:0 (1/15)
intron_pos 178:1 (2/15)
intron_pos 228:2 (3/15)
intron_pos 331:1 (4/15)
intron_pos 383:1 (5/15)
intron_pos 448:0 (6/15)
intron_pos 499:1 (7/15)
intron_pos 619:2 (8/15)
intron_pos 1195:0 (9/15)
intron_pos 1239:1 (10/15)
intron_pos 1321:2 (11/15)
intron_pos 1436:2 (12/15)
intron_pos 1504:0 (13/15)
intron_pos 1572:2 (14/15)
intron_pos 1638:1 (15/15)
BEGIN
1 MWPTSVEALR FYHTFAFSPG RRRRLFGLSI VFVIAALCVT SCDADAVPAP SPEAEPSLGA
61 GANPYLLDSL VKRLPKKGDK KEILISYLAA VPTLMGEIDQ YLLNLSASNS AQNSSKDRES
121 FSKKLNQIVH CLTTDAYVSV VSGALVAAIV EINQDKDLIP AYQLKYVFGN TCGNDSHSTR
181 LFMEHWQAGA RVFIGPEKNC KTEAAMAASQ NLPIISYRCN DQDISRDDYH YRTFARTVPP
241 AGEIFKAFMS LMKQYNWRKF SVVYDVKKGQ VKNELFETLK RMVETENKFE EHKFEIMNVS
301 KLEFSKMDIS SQQDIQSIEN AIKSTMQTTR IYLTFDNVRL FRTMLSIMGE MGLTQQDYML
361 IYVDTNYDWL NVYHSMNNHF LRNTMTYLHH SWDANNSSDR KMLDYARSAL SIIPTPVKLN
421 SQRFYNFWKK AGDYMHHFGV QKADNLKGNR IACYLYDAVY LYAKAIHELV EEYGNDDSYD
481 PTADGKAIID RIVNKKYRSI QGFDMRIDER GNSKGNFSLL SWQKVAPIMN KSDPSYYPLD
541 HALDLTAIFV EAPDKDRLPN LQFKSSRIQW LKGEPPPDEP VCGFHGENCR KKGIFSYLTV
601 VVMILIAVFS LVLTGFTLNY IRSRRFEKEL SMIWKIDPYE VRRVVGGVNN ESTASLMQSD
661 VMQFAKTKTP WWSKAPVQGT GMRGLASYKG TLVGLKDLMY GRKPKDLTRE AKKELRAMRQ
721 LAHPNVNNFL GIIVCQYSVT VVREYCSKGS LHDILRNENL KLDHMYVASF VDDLVKGMVY
781 IHDSELKMHG NLKSTNCLIT SRWTLQIADF GLRELREGIM YDSSYNIWEN FLWTAPEAMT
841 INGSLAISNP PTPKADAYSF GIIFHEIFTR EGPYKIYVQR GDVNGEAAPK KDSVECRALV
901 EKTVRRVYSD PYFRPDTSDL EVQNYVKEVM AACWHHDPYQ RPEFKTIKNK LKPLFHQIYK
961 QNIMDHMVLM MEKYQTQLED LVDERTIELK DEQRRSQHLL QRMLPSSVAE QLLAGQDVIP
1021 EAFPPVTIYF SDIVGFTTIS GESTPMEVVT FLNKLYTLFD SIIRRYDVYK VETIGDAYMV
1081 VSGVPQYKTM EYHAEQIAMM AIHILSAVRS FSIPHRSCEP LMIRIGMHTG PCVAGVVGKT
1141 MPRYTLFGDT VNTASRMESN GEALRIHCSS STQKVLTSID QGFLLEERGS LAIKGKGQMT
1201 TYWLNGRAGY EFTETIEDKM VVPDIFPRPN LKNRGSSWGV NRESSLSLAT EKSSQIMKRQ
1261 SAAMNRNNQD VIYYNQPLNS GGFTSRGTSN REMPKLYEED RESLLNQSAS LLGSRTSGRK
1321 KSTASKYNGF SASRMFSSTI SNASSSRPSR PSTFDHDTLA LRKRSTSLPD GEKLNLEFIE
1381 TTNLANNSVP AIPNNISSLE PVFRKASIID GYSSQSESPS QSQYPSYRDL TTGPHQRKRG
1441 IATVFPVRKR SLSCGDAVPL KINENGASGS ITTAVSPRSS CRALDPTMKL AARASSPDEI
1501 IFQEDDEDAL IDNDSLLTSN GNSKSEDVLR TCPQPRRKNK HSFLRDPSPL AKRFRDASPF
1561 GKKKPFWNSN KSNEHTSSPA DSISRLFRRF RGGSVNEYAD LNHYCDDEDE SGRANGYEMQ
1621 EMGKMTGRQR EQRNGSRTNR SVSCSPDECG TLTDSSDPHL TIPSSSIGDS SASTSLSCS
//