LOCUS CCD68927.1 928 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans NCAM (neural cell adhesion molecule)
homolog protein.
ACCESSION BX284606-142
PROTEIN_ID CCD68927.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="ncam-1"
/locus_tag="CELE_F02G3.1"
/standard_name="F02G3.1a"
/note="Product from WormBase gene class ncam"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00017184"
/db_xref="GOA:Q19128"
/db_xref="InterPro:IPR003598"
/db_xref="InterPro:IPR003599"
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR007110"
/db_xref="InterPro:IPR009138"
/db_xref="InterPro:IPR013098"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR036116"
/db_xref="InterPro:IPR036179"
/db_xref="UniProtKB/TrEMBL:Q19128"
/db_xref="WormBase:WBGene00017184"
intron_pos 19:1 (1/12)
intron_pos 72:2 (2/12)
intron_pos 118:1 (3/12)
intron_pos 163:1 (4/12)
intron_pos 212:1 (5/12)
intron_pos 253:0 (6/12)
intron_pos 305:1 (7/12)
intron_pos 422:0 (8/12)
intron_pos 476:1 (9/12)
intron_pos 572:1 (10/12)
intron_pos 848:1 (11/12)
intron_pos 913:2 (12/12)
BEGIN
1 MTRIVWLLLL LAGIPAISGW TLSLSPTEER LQNRRSGDNF LVVCKVKDFD GAASDAKIEW
61 YRDGKLIPRF GSTMTIERTY SNQLMINRPK ISDGGKYTCK TEIQGEQQEV SAEISFVDPP
121 KFLNVQESQH PEEGTRAEIV CEVEGTDQLE VFWQFNGVTL DETSQRGYEF SENNQILYIP
181 HFTAKKDDGI YNCNAAQYSS FETLSVNVTG YARPTITVFD VPNGNRGIEG HTIELKCGAV
241 GKPKPTYKWF FEDDEVPIAR SDKHNVEEGL LIIESLNSED AGTYKCVANN TVGSNERTFD
301 LAVFLKPKVD LKHEYVVKEG DDVELVCSYH GEGHVTAKFV SGHSEFAVRN EAVSAGNSEE
361 IRPESNESEE VTTTSENSEE TSTQDEVELK SAENVNDEED HTSQQDDGEQ DEQEESKKWK
421 RFADDVNNQR ISVRAEENKL ILTIKSISLE DAADYTCAVS NDAGTVNKVT QVGIIHPPTL
481 RHYTGPHIRS FDGNTVSVYC DVSAVPSPKW HWFKNGKEVE ANGVSIQIFT QGSSTKLTLE
541 NFDGSDNFGV YTCRADNGVG QLEKQIDVIK VVSPATPSGM NCKKMVYPNY GKCSFESDIY
601 EKEESKPQTM ELLVAKLEEM ESDYNWSHAQ PVSVPFEDDL TIPNLTSNTQ YVIKARAVNE
661 AGSSEYSEEI SLETTDPWAP QAPGSVAMKC SDYCTVSWDT PNDHGSPLLK FKVTIQEMKY
721 KTDDDEVEEK SDEKSNNNSE ETETTTSDDN DETEASNESI EIKENSEEQE TTLAHEDSAE
781 ILPTDPSTSV ERDEMVPYGS LLVLNVDSEE NQVQLTNIKQ HSYYKISVAA ENEKGQGEPA
841 EIDFQTDDSP TKYEEGIDST HLIIAIAIGV LFLLLLVDLG CFITNKCGLI SCICLNLCGK
901 NAGAKQRDLE SGRGGPESNR LLDSSGAR
//