LOCUS CCD68906.1 1758 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Collagen alpha-2(IV) chain protein.
ACCESSION BX284606-3864
PROTEIN_ID CCD68906.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="let-2"
/locus_tag="CELE_F01G12.5"
/standard_name="F01G12.5a"
/note="Confirmed by transcript evidence"
/db_xref="WormBase:WBGene00002280"
intron_pos 8:2 (1/17)
intron_pos 27:0 (2/17)
intron_pos 48:0 (3/17)
intron_pos 81:1 (4/17)
intron_pos 144:1 (5/17)
intron_pos 203:0 (6/17)
intron_pos 229:0 (7/17)
intron_pos 265:0 (8/17)
intron_pos 304:0 (9/17)
intron_pos 359:0 (10/17)
intron_pos 449:2 (11/17)
intron_pos 737:0 (12/17)
intron_pos 961:1 (13/17)
intron_pos 1233:0 (14/17)
intron_pos 1310:1 (15/17)
intron_pos 1574:1 (16/17)
intron_pos 1729:0 (17/17)
BEGIN
1 MKQRAALGPV LRLAILALLA VSYVQSQATC RDCSNRGCFC VGEKGSMGAP GPQGPPGTQG
61 IRGFPGPEGL AGPKGLKGAQ GPPGPVGIKG DRGAVGVPGF PGNDGGNGRP GEPGPPGAPG
121 WDGCNGTDGA PGIPGRPGPP GMPGFPGPPG MDGLKGEPAI GYAGAPGEKG DGGMPGMPGL
181 PGPSGRDGYP GEKGDRGDTG NAGPRGPPGE AGSPGNPGIG SIGPKGDPGD LGSVGPPGPP
241 GPREFTGSGS IVGPRGNPGE KGDKGEPGEG GQRGYPGNGG LSGQPGLPGM KGEKGLSGPA
301 GPRGKEGRPG NAGPPGFKGD RGLDGLGGIP GLPGQKGEAG YPGRDGPKGN SGPPGPPGGG
361 TFNDGAPGPP GLPGRPGNPG PPGTDGYPGA PGPAGPIGNT GGPGLPGYPG NEGLPGPKGD
421 KGDGGIPGAP GVSGPSGIPG LPGPKGEPGY RGTPGQSIPG LPGKDGKPGL DGAPGRKGEN
481 GLPGVRGPPG DSLNGLPGAP GQRGAPGPNG YDGRDGVNGL PGAPGTKGDR GGTCSACAPG
541 TKGEKGLPGY SGQPGPQGDR GLPGMPGPVG DAGDDGLPGP AGRPGSPGPP GQDGFPGLPG
601 QKGEPTQLTL RPGPPGYPGL KGENGFPGQP GVDGLPGPSG PVGPPGAPGY PGEKGDAGLP
661 GLSGKPGQDG LPGLPGNKGE AGYGQPGQPG FPGAKGDGGL PGLPGTPGLQ GMPGEPAPEN
721 QVNPAPPGQP GLPGLPGTKG EGGYPGRPGE VGQPGFPGLP GMKGDSGLPG PPGLPGHPGV
781 PGDKGFGGVP GLPGIPGPKG DVGNPGLPGL NGQKGEPGVG VPGQPGSPGF PGLKGDAGLP
841 GLPGTPGLEG QRGFPGAPGL KGGDGLPGLS GQPGYPGEKG DAGLPGVPGR EGSPGFPGQD
901 GLPGVPGMKG EDGLPGLPGV TGLKGDLGAP GQSGAPGLPG APGYPGMKGN AGIPGVPGFK
961 GDGGLPGLPG LNGPKGEPGV PGMPGTPGMK GNGGLPGLPG RDGLSGVPGM KGDRGFNGLP
1021 GEKGEAGPAA RDGQKGDAGL PGQPGLRGPQ GPSGLPGVPG FKGETGLPGY GQPGQPGEKG
1081 LPGIPGKAGR QGAPGSPGQD GLPGFPGMKG ESGYPGQDGL PGRDGLPGVP GQKGDLGQSG
1141 QPGLSGAPGL DGQPGVPGIR GDKGQGGLPG IPGDRGMDGY PGQKGENGYP GQPGLPGLGG
1201 EKGFAGTPGF PGLKGSPGYP GQDGLPGIPG LKGDSGFPGQ PGQEGLPGLS GEKGMGGLPG
1261 MPGQPGQSIA GPVGPPGAPG LQGKDGFPGL PGQKGESGLS GLPGAPGLKG ESGMPGFPGA
1321 KGDLGANGIP GKRGEDGLPG VPGRDGQPGI PGLKGEVGGA GLPGQPGFPG IPGLKGEGGL
1381 PGFPGAKGEA GFPGTPGVPG YAGEKGDGGL PGLPGRDGLP GADGPVGPPG PSGPQNLVEP
1441 GEKGLPGLPG APGLRGEKGM PGLDGPPGND GPPGLPGQRG NDGYPGAPGL SGEKGMGGLP
1501 GFPGLDGQPG GPGAPGLPGA PGAAGPAYRD GFVLVKHSQT TEVPRCPEGQ TKLWDGYSLL
1561 YIEGNEKSHN QDLGHAGSCL QRFSTMPFLF CDFNNVCNYA SRNDKSYWLS TSEAIPMMPV
1621 NEREIEPYIS RCAVCEAPAN TIAVHSQTIQ IPNCPAGWSS LWIGYSFAMH TGAGAEGGGQ
1681 SLSSPGSCLE DFRATPFIEC NGARGSCHYF ANKFSFWLTT IDNDSEFKVP ESQTLKSGNL
1741 RTRVSRCQVC VKSTDGRH
//