LOCUS CCD68799.1 865 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans CUB_2 domain-containing protein protein. ACCESSION BX284606-2043 PROTEIN_ID CCD68799.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="M02D8.5" /locus_tag="CELE_M02D8.5" /standard_name="M02D8.5" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00019731" /db_xref="EnsemblGenomes-Tr:M02D8.5" /db_xref="InterPro:IPR035914" /db_xref="UniProtKB/TrEMBL:Q21464" /db_xref="WormBase:WBGene00019731" intron_pos 43:2 (1/17) intron_pos 82:2 (2/17) intron_pos 129:1 (3/17) intron_pos 211:2 (4/17) intron_pos 255:1 (5/17) intron_pos 310:1 (6/17) intron_pos 332:0 (7/17) intron_pos 373:1 (8/17) intron_pos 499:1 (9/17) intron_pos 540:0 (10/17) intron_pos 570:2 (11/17) intron_pos 649:0 (12/17) intron_pos 689:2 (13/17) intron_pos 724:1 (14/17) intron_pos 761:0 (15/17) intron_pos 798:2 (16/17) intron_pos 837:1 (17/17) BEGIN 1 MYTKLNLIPL FFIIFFRTSV AFQDGILFST PNFPQPYTGQ LSERRSVSVN ETQGVAVVFE 61 QFLASAHDCV IACPTNNDGC SSLCGDAMDH GLVPKILRVP GSADIAMVSI EQNDGFPHSG 121 ISGKIISYDL NTISFFQCND QVDLSTGETY YLVSQNYPLS PTTEFSSCSI NFSTSGNRQG 181 IRFAVYDFYT NQNQKDSFFI TGSNGQNVKI TGFATEDEPV VYYFQNGANA IFSITHQDHS 241 FIQKRFYILV KSYEIAAEKQ CDNMGNFNLA LGQSINFGTK QFGINSYDNN LNCGYNFSRV 301 ATANSLFALG IQYESEKCCD TMVIDGLTEY EQIYQGFQYS NLFFTKSQQV SFLFQSDGII 361 GGTGLNASLE HIDCTCSPDM MLGKNSVLTS PGYTNSISYC PGLECSSNIE FQDDLYDLQL 421 EFTDISLRGY SLNNETDSLT VYDSYQHIVV QMMPFYAAFT SFWATVSPVN VQFISKSLTA 481 FPLDQIGRGF SVNLNLLKKQ FVTNNIVFND AFFFEDISNL LLKSGNTYEF VITGRAGHQI 541 SIYFFTKTTN QVFIDIFDGD SMDAKRIDNK ALYSNVLENG PSLSLTTTSE KAILHVRGNP 601 TFLQPGTDFQ AMITDLKLPT ECGPLVHSMR EQKTSSGDIT LRGNNCYKVL HFSDSSYNQG 661 AFMNIAFSKP ISSKIFYGLT TSSDDCIAHN SSEPIAQDLF KNYLVLQYST TDISSVSYSW 721 AISSGIIART MQPGETVVLV SDDYRKYNAS PLDQQFSVQL EGESNVQTGL MCEFLADSGS 781 GAGTLSWSSY DDIKQKTSYS NAKKSLKYAS CGNKLLVDYT SPDGGPDNGL YLKITRADLR 841 CSRSPMRLSI SVIVLLTVSF ISLIF //