LOCUS CCD68665.2 953 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans SET domain-containing protein protein.
ACCESSION BX284606-1288
PROTEIN_ID CCD68665.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="set-19"
/locus_tag="CELE_W01C8.3"
/standard_name="W01C8.3"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00020919"
/db_xref="EnsemblGenomes-Tr:W01C8.3"
/db_xref="InterPro:IPR001214"
/db_xref="UniProtKB/TrEMBL:Q9GYG8"
/db_xref="WormBase:WBGene00020919"
intron_pos 33:0 (1/7)
intron_pos 94:0 (2/7)
intron_pos 129:0 (3/7)
intron_pos 152:2 (4/7)
intron_pos 196:1 (5/7)
intron_pos 252:0 (6/7)
intron_pos 284:2 (7/7)
BEGIN
1 MVRRRRLGMM RTVRMNAIRP SSKEKEQRPT PKLPLIKGKS VPMISELPDE EQNHRSKWPE
61 TATFVTIERN VLGNYISESA KEAIEMGLNR RNKVCCDCGP DDDCSKNPDC KCYQMGKELQ
121 KYFKSDFLVY GKPVKIMDSM YWDGPMFACS EGCGCRGDCD LNGLKDIDKD HDKKYNVTRR
181 DGKGFCLFTM FQIEKGQPVL AFNGEITGYH SINKKPAVEQ YALQLSEGDP RLSSFIRDCN
241 VLNKDYKDVL RNALETKLWV NPLEKGNCAR FLSHACQANL ELGRVFQGGF SFADVRIVLF
301 AKETIPAGSE LTFHYGPDYK EKFLEDLCLC YTCFVPTIVR TSRRIARKRA YVREPTPESE
361 RCKRARDRSI IAAETIEAEI EEAHEKRMAL KARKAFLLKR KLRKSNVRRT ESPENKRSPV
421 QSSSSSSSGS TEGNVSSLRS RSDVRKSTRL VGVRSSSSIS VATNHAQSQD PGFQPHSGVT
481 RTLKGRFCRQ SGRIAVSRSL LQLRANKRRQ QSTEGDASGV RKNEGLVARK ERERKELMLF
541 SKRSRPQTCF MGVKSSGRDS SMSSTTSSER ERSPSLTESP VRSRNHVRGS SPQSSGLNER
601 ASRCRERVTR RTRLQTTPAR VPVELESVSP IPARVRQRSP EVQSPKSEMR TRSRARCDGY
661 DVERDQSKTG DVVQIDVDGS PRITRSHANN HPMGHRKIQE KPIVEDAIPH LEPIIDGYHP
721 ERNESVVRDV MEPLDVQIPQ MNGEHHQTFV SPTSNKSLRR CGLRSDYSSV LNSPASTSQE
781 STGMRDTQRL NKVLSKNNIG ELESPRLNGT RVLSPPRTRH QISNAIDSDA FNDMPVLTQE
841 PVQERRMIAQ VFEIPRKTTA YNQPSSSNSQ QHGQFQVCSN GSLGFFHPQI YQSMMTPPGI
901 VPHAVISNSA LGYSSYQAYI PNNNNSEQQY PSTSEDITRK SHRMIVKPTR FLN
//