LOCUS CCD68219.1 975 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Phosphoribosylglycinamide formyltransferase
protein.
ACCESSION BX284606-1548
PROTEIN_ID CCD68219.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="F38B6.4"
/locus_tag="CELE_F38B6.4"
/standard_name="F38B6.4"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00018174"
/db_xref="EnsemblGenomes-Tr:F38B6.4"
/db_xref="GOA:Q20143"
/db_xref="InterPro:IPR000115"
/db_xref="InterPro:IPR002376"
/db_xref="InterPro:IPR004607"
/db_xref="InterPro:IPR004733"
/db_xref="InterPro:IPR010918"
/db_xref="InterPro:IPR011054"
/db_xref="InterPro:IPR011761"
/db_xref="InterPro:IPR013815"
/db_xref="InterPro:IPR016185"
/db_xref="InterPro:IPR016188"
/db_xref="InterPro:IPR020559"
/db_xref="InterPro:IPR020560"
/db_xref="InterPro:IPR020561"
/db_xref="InterPro:IPR020562"
/db_xref="InterPro:IPR036477"
/db_xref="InterPro:IPR036676"
/db_xref="InterPro:IPR036921"
/db_xref="InterPro:IPR037123"
/db_xref="UniProtKB/TrEMBL:Q20143"
/db_xref="WormBase:WBGene00018174"
intron_pos 42:1 (1/17)
intron_pos 100:0 (2/17)
intron_pos 136:2 (3/17)
intron_pos 174:0 (4/17)
intron_pos 227:1 (5/17)
intron_pos 294:0 (6/17)
intron_pos 349:1 (7/17)
intron_pos 371:1 (8/17)
intron_pos 417:2 (9/17)
intron_pos 458:0 (10/17)
intron_pos 557:1 (11/17)
intron_pos 693:0 (12/17)
intron_pos 724:2 (13/17)
intron_pos 816:0 (14/17)
intron_pos 858:0 (15/17)
intron_pos 901:1 (16/17)
intron_pos 925:0 (17/17)
BEGIN
1 MNVLIVGSGG REHALAWKMK QSPKVKNVIV APGNGGHSER IDINSNDLDA VADFCEKHNI
61 HCVLIGPEEP LSNGLADHLI RIHPNLMVFG PLKDGAQLET SKSFSKHFMK EYGLPTADFV
121 TVSIENVKSL DCVFERLPWK NSVVKADGLA AGKGVIIPRN NAEAVEAARS ILHGQFGNAG
181 RTVIIEERLE GYEVSALAFT DGISFKRMPL GKDHKRLLES DLGPNTGGMG VVAPVSVPKE
241 VDRQIDEIFE KTLKGLADRK IKYCGVLYAG FMIVDQKPLL LEFNCRFGDP ETQVLMRLLE
301 SDLFEIISSC VNQTLNTCDI NWSTKSVCGV VLASGNYPKS GDKGSPITEI PSPDSTNVVF
361 HAGTSVINSQ IVTNGGRILC VTSLADTLHD AREHANKIAQ NIQFTGKQFR KDIGKTIDIG
421 TPSLSYGSSG VNIDEGNQFV EDIKLLVKKT LLPGAAQIGG FGAVLDLKKA GFSNDSQLVV
481 GIDGVGTKIE VATHCNNFTG VGYDVVAMCV NDVICHCAKP IAFLDYFVCG KLERSMATQV
541 LTSISEACVE AECSLIGGET AEMPGVYSTH QWDLAGCAIA ARESTWPMLP LSSEIRDGDV
601 ILGLPSSGLH SNGFSLARKI LTVNGVKYND PLPWDSKSTF GTELLRGTKL YVKKVLPLLS
661 TGLVKGCAHI TGGGLTENAI RVLDKNSKDS LVIDCASWKF REIFNWMAAA GPVDTKEMIR
721 TFNCGIGMVL IVSPDNVEKV KKQLRKHEEE FYEIGHVENS KNGEAIKFVN EEKMFQREKY
781 TTQRKRVRVA ILISGTGTNM QKLIERSKTP DSNCDVVLVV SNKEGAGGLT IAASYGIPTK
841 VVPHTADRVT GDTELAQVLK DFGTELVCLG GYMRILSPCF ISQFPSRIIN IHPSLLPAFK
901 GAHALQDALN FGVRIVGCTA HFVDELVDHG DIIAQRPVVV EDTDTIETVR QKIQLQEHEM
961 FPNAMIAVAA KILEK
//