LOCUS CCD68019.1 1885 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Voltage-dependent T-type calcium
channel subunit alpha protein.
ACCESSION BX284606-1834
PROTEIN_ID CCD68019.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="cca-1"
/locus_tag="CELE_C54D2.5"
/standard_name="C54D2.5d"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00000367"
/db_xref="EnsemblGenomes-Tr:C54D2.5d"
/db_xref="GOA:Q7Z003"
/db_xref="InterPro:IPR002077"
/db_xref="InterPro:IPR005445"
/db_xref="InterPro:IPR005821"
/db_xref="InterPro:IPR027359"
/db_xref="UniProtKB/TrEMBL:Q7Z003"
/db_xref="WormBase:WBGene00000367"
intron_pos 23:2 (1/29)
intron_pos 51:0 (2/29)
intron_pos 70:0 (3/29)
intron_pos 104:2 (4/29)
intron_pos 183:0 (5/29)
intron_pos 213:2 (6/29)
intron_pos 291:2 (7/29)
intron_pos 317:2 (8/29)
intron_pos 353:2 (9/29)
intron_pos 381:0 (10/29)
intron_pos 406:0 (11/29)
intron_pos 437:0 (12/29)
intron_pos 479:1 (13/29)
intron_pos 519:0 (14/29)
intron_pos 561:1 (15/29)
intron_pos 728:2 (16/29)
intron_pos 790:2 (17/29)
intron_pos 831:2 (18/29)
intron_pos 882:0 (19/29)
intron_pos 942:0 (20/29)
intron_pos 1212:0 (21/29)
intron_pos 1292:2 (22/29)
intron_pos 1465:1 (23/29)
intron_pos 1500:1 (24/29)
intron_pos 1620:0 (25/29)
intron_pos 1687:0 (26/29)
intron_pos 1753:1 (27/29)
intron_pos 1813:0 (28/29)
intron_pos 1868:2 (29/29)
BEGIN
1 MLRQPVPELR SFQSLSKYAG GPRSVLGRRT SAITVNRRQS QSTRRHEDVE ALGSIEGSKE
61 TLQLSEHGRL ASSSEASPSR WEGRQIEWGN EEQIEEESEL PYPGFAEPAL RCFYQARPPR
121 KWALQMVMSP WFDRITMAVI MINCVTLGMY RPCEDGPDCD TYRCQILDII DNCIFVYFAF
181 EMVIKIMALG FYGPAAYMSD TWNRLDFFIV MAGIAEFVLH EYLGGNINLT AIRTVRVLRP
241 LRAVNRIPSM RILVNLLLDT LPMLGNVLLL CFFVFFIFGI VGVQLWAGLL RNRCVINLPK
301 TISENQSALF NNVKLTRFYI PEDTSLEYIC SQPDANGLHT CSNLPPYTVD GVKCNLTLDE
361 YDKVTNDSCI NWNIYYNECQ VMQRNPFQGS VSFDNIGFAW VAIFLVISLE GWTDIMYYVQ
421 DAHSFWNWIY FVLLIVIGAF FMINLCLVVI ATQFAETKRR ETERMLQERK MLLNRDSISC
481 TGSEIGGASS KEEGDTVYAA FVRFIGHTFR RTKRAAKKKY TAYMEERAER KSSERQQRRK
541 SKLDDMATLS RIEEKAEDEE DETTITRENG DDQIEQNGDG VRIKRVKIEE EPKIKIGNGN
601 SNGPHYKHSS SDEESDEDGE EDQVYDGEEA KKKSTPSKLW WFREKIQKFV ICDHFTRGIL
661 VAILVNTLSM GVEYHQQPEI LTVILEYSNL FFTALFALEM LLKIIASGLF GYLADGFNLF
721 DGGIVALSVL ELFQEGKGGL SVLRTFRLLR ILKLVRFMPA LRYQLVVMLR TMDNVTVFFG
781 LLVLFIFIFS ILGMNLFGCK FCKVEEKFLG GLAKKCERKN FDTLLWALIT VTLGMVLFGC
841 KFCNHPDTGL QCTSAQVISS ICECDRMNFD NFLFATVTVF QILTQEDWNM VLFNGMAQTN
901 PWAALYFVAL MTFGNYVLFN LLVAILVEGF QESKEEEKRQ LEEDARKQAV EEEDERKREL
961 ELIIAKTTSP AFNNGVAPAE CTCQRPSSPE ESPSPRLLSA NYHPSPERKH SANLDAIIDK
1021 RLVLRNSAPF DRSPVSEGRD DSRLNRHASL VLPVANGVPY RRQRVHSWSG LCHHFNPNCP
1081 VHGRRALIET YAREKFLEAS QELKQALAEE EKRNEAKQNT FVRKLLKKTC LHNRTEFSLF
1141 LMGPKNPLRI KCLQTTQKKW FDYTVLFFIG INCITLAMER PSIPPDSFER QFLHISGYIF
1201 TVIFTGEMMM KVIANGCFIG QAAYFKDGWN ILDGILVVIS LINIAFELLA TGDSPKIFGV
1261 IRVLRLLRAL RPLRVINRAP GVKLVVMTLI SSLKPIGNIV LICCTFFIIF GILGVQLFKG
1321 MMYHCIGPEV GNVTTKADCI EDYRNKWVNH RYNFDNLGQA LMSLFVLSSK DGWVSIMYQG
1381 IDAVGVDVQP IENYNEWRMI YFISFLLLVG FFVLNMFVGV VVENFHKCKE ALEKEMREKE
1441 KEKRLKRKLK RQKFEESMAG KRKKMERNYP YYHDYGHTRL FLHGIVTSKY FDLAIAAVIG
1501 INVISMAMEF YMMPMGLKYV LKALNYFFTA VFTLEAAMKL IALGFKRFFI EKWNRLDMFI
1561 VILSIAGIIF EEFEALELPI NPTIIRVMRV LRIARVLKLL KMAKGIRSLL DTVGEALPQV
1621 GNLGSLFFLL FFIFAALGVE LFGKLECSED HPCDGLGEHA HFKNFGMAFL TLFRIATGDN
1681 WNGIMKDALR DDCDSSDHCE TNCCVDPILA PCFFVIFVLI SQFVLVNVVV AVLMKHLEES
1741 NKRDAEGPAE PTGENIENEI TKSDDDEIVE EHEPLAIEHV KEGELDEEEE TEEGPTTQIP
1801 DGHGGIKRLS MQVLEQELIE VERHLEERYR RASECLGGEL QPLNPGEIED LDDPEFRPRS
1861 RSHRPRARTN SALSNKSRGS HKSAL
//