LOCUS       CCD67556.1               778 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Degenerin deg-1 protein.
ACCESSION   BX284606-1808
PROTEIN_ID  CCD67556.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="deg-1"
                     /locus_tag="CELE_C47C12.6"
                     /standard_name="C47C12.6a"
                     /note="Confirmed by transcript evidence"
                     /db_xref="EnsemblGenomes-Gn:WBGene00000950"
                     /db_xref="WormBase:WBGene00000950"
     intron_pos      116:0 (1/15)
     intron_pos      149:0 (2/15)
     intron_pos      220:0 (3/15)
     intron_pos      253:0 (4/15)
     intron_pos      274:2 (5/15)
     intron_pos      320:0 (6/15)
     intron_pos      359:1 (7/15)
     intron_pos      377:1 (8/15)
     intron_pos      398:0 (9/15)
     intron_pos      450:2 (10/15)
     intron_pos      538:0 (11/15)
     intron_pos      610:1 (12/15)
     intron_pos      660:0 (13/15)
     intron_pos      684:0 (14/15)
     intron_pos      718:1 (15/15)
BEGIN
        1 MSNHHSKTKK TSMLGREDYI YSHDITNKNK KEKLNGASKN NDYNQDDDDE TMKSKMMDFC
       61 DKTTAHGAKR VLIARNSFSK LMWGLIIFSF LLMFAYQASK LIFKFSAHEK ITDISLKFDD
      121 VEFPAITFCN LNPYKKSLVM MVPSIRDTMD VYDNAKTHSK SEGEKKKPKV SRKQHSDASQ
      181 QMVRELFAKE IEEGMVELKK SNKTLQSQNK SGRRRSQRSI ENRRYEAIEA HCKCVGNIGM
      241 ECIRFESPPR DPSSKCICTY DRDMEVAWPC FNISVWYDHE CPLCHDDGYC ESTLPSGTTS
      301 SDKWPCMCRN RGDTSERDDT PYCIGKAGVG KIEIRKLWLE NNMTTTSTTT TTTTTPPPTT
      361 TSTTTTTTTT PPPTTTARPN QRAIVSNPET IKAMGFQGMT DGVAMLTRAK ENLMFTMAAL
      421 SDKQRIALSQ SKHEFIEMCS FNGKECDIDE DFRLHVDPEF GNCFTFNYDV NNNYTSSRAG
      481 PMYGIRVLLF VNTSDYMSTS ESSGVRLAIH PPTEYPFPDT FGYSAPVGFA SSFGIKKKVM
      541 QRLPAPYGEC VETKKVVDRN YIYAGYDYHP EGCHRSCFQN GLIDDCSCGD PRFPVPEGYR
      601 HCSAFNATAR TCLEKNIGSV GDFHHITQKM DKCVCKQSCE EIIHEVTFSC SKWPSGATDL
      661 GDCDGMTESE CEQYYRLNAA MIEVFYEQLN YELLQESEAY GLVNLIADFG GHLGLWLGFS
      721 VITVMEVCVL LVDMISLFFK SRHEEKLLRQ STKRKDVPED KRQITVGSGR KSDAFVSI
//