LOCUS CCD67556.1 778 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Degenerin deg-1 protein. ACCESSION BX284606-1808 PROTEIN_ID CCD67556.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="deg-1" /locus_tag="CELE_C47C12.6" /standard_name="C47C12.6a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00000950" /db_xref="WormBase:WBGene00000950" intron_pos 116:0 (1/15) intron_pos 149:0 (2/15) intron_pos 220:0 (3/15) intron_pos 253:0 (4/15) intron_pos 274:2 (5/15) intron_pos 320:0 (6/15) intron_pos 359:1 (7/15) intron_pos 377:1 (8/15) intron_pos 398:0 (9/15) intron_pos 450:2 (10/15) intron_pos 538:0 (11/15) intron_pos 610:1 (12/15) intron_pos 660:0 (13/15) intron_pos 684:0 (14/15) intron_pos 718:1 (15/15) BEGIN 1 MSNHHSKTKK TSMLGREDYI YSHDITNKNK KEKLNGASKN NDYNQDDDDE TMKSKMMDFC 61 DKTTAHGAKR VLIARNSFSK LMWGLIIFSF LLMFAYQASK LIFKFSAHEK ITDISLKFDD 121 VEFPAITFCN LNPYKKSLVM MVPSIRDTMD VYDNAKTHSK SEGEKKKPKV SRKQHSDASQ 181 QMVRELFAKE IEEGMVELKK SNKTLQSQNK SGRRRSQRSI ENRRYEAIEA HCKCVGNIGM 241 ECIRFESPPR DPSSKCICTY DRDMEVAWPC FNISVWYDHE CPLCHDDGYC ESTLPSGTTS 301 SDKWPCMCRN RGDTSERDDT PYCIGKAGVG KIEIRKLWLE NNMTTTSTTT TTTTTPPPTT 361 TSTTTTTTTT PPPTTTARPN QRAIVSNPET IKAMGFQGMT DGVAMLTRAK ENLMFTMAAL 421 SDKQRIALSQ SKHEFIEMCS FNGKECDIDE DFRLHVDPEF GNCFTFNYDV NNNYTSSRAG 481 PMYGIRVLLF VNTSDYMSTS ESSGVRLAIH PPTEYPFPDT FGYSAPVGFA SSFGIKKKVM 541 QRLPAPYGEC VETKKVVDRN YIYAGYDYHP EGCHRSCFQN GLIDDCSCGD PRFPVPEGYR 601 HCSAFNATAR TCLEKNIGSV GDFHHITQKM DKCVCKQSCE EIIHEVTFSC SKWPSGATDL 661 GDCDGMTESE CEQYYRLNAA MIEVFYEQLN YELLQESEAY GLVNLIADFG GHLGLWLGFS 721 VITVMEVCVL LVDMISLFFK SRHEEKLLRQ STKRKDVPED KRQITVGSGR KSDAFVSI //