LOCUS CCD67508.2 1035 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Fibronectin type-III domain-containing
protein protein.
ACCESSION BX284606-1344
PROTEIN_ID CCD67508.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="R07E4.1"
/locus_tag="CELE_R07E4.1"
/standard_name="R07E4.1b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00019935"
/db_xref="EnsemblGenomes-Tr:R07E4.1b"
/db_xref="GOA:Q5WRT5"
/db_xref="InterPro:IPR000159"
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR036116"
/db_xref="InterPro:IPR039269"
/db_xref="UniProtKB/TrEMBL:Q5WRT5"
/db_xref="WormBase:WBGene00019935"
intron_pos 46:2 (1/18)
intron_pos 59:1 (2/18)
intron_pos 96:1 (3/18)
intron_pos 164:1 (4/18)
intron_pos 196:0 (5/18)
intron_pos 259:1 (6/18)
intron_pos 322:1 (7/18)
intron_pos 358:1 (8/18)
intron_pos 388:2 (9/18)
intron_pos 458:2 (10/18)
intron_pos 553:2 (11/18)
intron_pos 602:0 (12/18)
intron_pos 662:0 (13/18)
intron_pos 700:1 (14/18)
intron_pos 755:0 (15/18)
intron_pos 780:2 (16/18)
intron_pos 879:2 (17/18)
intron_pos 957:0 (18/18)
BEGIN
1 MSQPYLVGLD DSRGRPLISV CAGAAHTLAS TALLCRQQSL DEPATRALEK VASGPILRGI
61 SVQRQSSVEF SERRRAEDAQ KLQKKAIKTN MISMFGAIIA CEQNDAEALR VVIDKNQFDV
121 TSAVNGNYEL YPTKWSLLDI AINLNNVKCA LLLQERGAIE SFQFNTLEKR KKAVTEALEI
181 SRSKLSELKK APHSRDHDKR ISSLQIHLSL LKQMEDFLEK TVRPRMLQSV SVEAISHSRA
241 LIQFNYKEPQ QSIILKFRIQ WSDTEDFKTI LGEIIEPRPL ENKIILHNLE HGKHYYFTIT
301 CIGVNGESKP MVCWPGRIEI TSFDDGEKRE SWSDRIETMN KLMEDVDKHR QSLVWQRVFP
361 MEINGKKRKN GFRELFSAST KLSKHVHHGV YLAALIYTEG KVLVTVDDCV PIVPVDENVT
421 TVSKDDHHWL IKMSMCWDQI NGLMDVNPSA YSNNVSLSFR NKLINAAFSM QEALGIRNIG
481 HVHYMPLIYD NCFFLLTVRF IEPSVNFQTI TLRWLPFNKL LRKKMPTTAI DNMTKQLLNI
541 LNFYEASQIQ LQRGLYVGYL KLHSSLNSIR VVVPDVLPSM LPFTRVRDNP HLTREEWEWI
601 KSIDMNEPFF ATKAQERIHS DIAHAIHRLL NELDIDPDLV PGTRLYHAEI VQPDDNTTVI
661 LILPRSDDVC SVPTGSSKTT EYMESKRQCN SVPIPVFDMI HFLTYQTSFL TSYCKLSIFL
721 EHFMMISQFE QRKCLLENDS KVYKNQTEIL NEFQKRLEEI WQNARWISRV ASEARDKHVK
781 VSKHAIPLTR FMTALPRNPE EVRKEENERE SFRRIQQRRR MRLELLGDRL ASRDGSDTED
841 EYEFVMSNDP NPRNNGFLKS DQPRSALNSP QQSYRDIDSV YRRRRKVSTD LALALSNTSL
901 NNLNGIEEKN LTPDRPQIKE DKIFLESINV MVGYDCQIPK GTKIALSVTQ STEAGEVVNF
961 VIEQIAKSAA GIDNEITLND SSELCLVAAF GQRERRLKNE TVIQRLDRTW LRGNFLIRRK
1021 DGFMNGEDIA NESLV
//