LOCUS CCD67507.2 1134 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Fibronectin type-III domain-containing
protein protein.
ACCESSION BX284606-1343
PROTEIN_ID CCD67507.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="R07E4.1"
/locus_tag="CELE_R07E4.1"
/standard_name="R07E4.1a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00019935"
/db_xref="EnsemblGenomes-Tr:R07E4.1a"
/db_xref="GOA:H2KZC1"
/db_xref="InterPro:IPR000159"
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR036116"
/db_xref="InterPro:IPR039269"
/db_xref="UniProtKB/TrEMBL:H2KZC1"
/db_xref="WormBase:WBGene00019935"
intron_pos 41:2 (1/21)
intron_pos 71:2 (2/21)
intron_pos 95:1 (3/21)
intron_pos 145:2 (4/21)
intron_pos 158:1 (5/21)
intron_pos 195:1 (6/21)
intron_pos 263:1 (7/21)
intron_pos 295:0 (8/21)
intron_pos 358:1 (9/21)
intron_pos 421:1 (10/21)
intron_pos 457:1 (11/21)
intron_pos 487:2 (12/21)
intron_pos 557:2 (13/21)
intron_pos 652:2 (14/21)
intron_pos 701:0 (15/21)
intron_pos 761:0 (16/21)
intron_pos 799:1 (17/21)
intron_pos 854:0 (18/21)
intron_pos 879:2 (19/21)
intron_pos 978:2 (20/21)
intron_pos 1056:0 (21/21)
BEGIN
1 MKSKRSFIRA ILFVLRLQKN VNVRRNQSRR NTIFTTRNIT RCESTKHRRR SSHKSTQRHR
61 NSAPSSSYPL RSPSVIRASF LDNHHNQQDN LCDFGAFSAM SQPYLVGLDD SRGRPLISVC
121 AGAAHTLAST ALLCRQQSLD EPATRALEKV ASGPILRGIS VQRQSSVEFS ERRRAEDAQK
181 LQKKAIKTNM ISMFGAIIAC EQNDAEALRV VIDKNQFDVT SAVNGNYELY PTKWSLLDIA
241 INLNNVKCAL LLQERGAIES FQFNTLEKRK KAVTEALEIS RSKLSELKKA PHSRDHDKRI
301 SSLQIHLSLL KQMEDFLEKT VRPRMLQSVS VEAISHSRAL IQFNYKEPQQ SIILKFRIQW
361 SDTEDFKTIL GEIIEPRPLE NKIILHNLEH GKHYYFTITC IGVNGESKPM VCWPGRIEIT
421 SFDDGEKRES WSDRIETMNK LMEDVDKHRQ SLVWQRVFPM EINGKKRKNG FRELFSASTK
481 LSKHVHHGVY LAALIYTEGK VLVTVDDCVP IVPVDENVTT VSKDDHHWLI KMSMCWDQIN
541 GLMDVNPSAY SNNVSLSFRN KLINAAFSMQ EALGIRNIGH VHYMPLIYDN CFFLLTVRFI
601 EPSVNFQTIT LRWLPFNKLL RKKMPTTAID NMTKQLLNIL NFYEASQIQL QRGLYVGYLK
661 LHSSLNSIRV VVPDVLPSML PFTRVRDNPH LTREEWEWIK SIDMNEPFFA TKAQERIHSD
721 IAHAIHRLLN ELDIDPDLVP GTRLYHAEIV QPDDNTTVIL ILPRSDDVCS VPTGSSKTTE
781 YMESKRQCNS VPIPVFDMIH FLTYQTSFLT SYCKLSIFLE HFMMISQFEQ RKCLLENDSK
841 VYKNQTEILN EFQKRLEEIW QNARWISRVA SEARDKHVKV SKHAIPLTRF MTALPRNPEE
901 VRKEENERES FRRIQQRRRM RLELLGDRLA SRDGSDTEDE YEFVMSNDPN PRNNGFLKSD
961 QPRSALNSPQ QSYRDIDSVY RRRRKVSTDL ALALSNTSLN NLNGIEEKNL TPDRPQIKED
1021 KIFLESINVM VGYDCQIPKG TKIALSVTQS TEAGEVVNFV IEQIAKSAAG IDNEITLNDS
1081 SELCLVAAFG QRERRLKNET VIQRLDRTWL RGNFLIRRKD GFMNGEDIAN ESLV
//