LOCUS CCD67045.2 1246 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Anaphase-promoting complex subunit
4-like WD40 domain-containing protein protein.
ACCESSION BX284606-1249
PROTEIN_ID CCD67045.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="ifta-1"
/locus_tag="CELE_C54G7.4"
/standard_name="C54G7.4"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00016935"
/db_xref="EnsemblGenomes-Tr:C54G7.4"
/db_xref="GOA:Q18859"
/db_xref="InterPro:IPR001680"
/db_xref="InterPro:IPR015943"
/db_xref="InterPro:IPR017233"
/db_xref="InterPro:IPR017986"
/db_xref="InterPro:IPR024977"
/db_xref="InterPro:IPR036322"
/db_xref="UniProtKB/TrEMBL:Q18859"
/db_xref="WormBase:WBGene00016935"
intron_pos 27:0 (1/26)
intron_pos 90:1 (2/26)
intron_pos 131:2 (3/26)
intron_pos 181:0 (4/26)
intron_pos 208:0 (5/26)
intron_pos 227:1 (6/26)
intron_pos 324:1 (7/26)
intron_pos 373:0 (8/26)
intron_pos 415:0 (9/26)
intron_pos 443:0 (10/26)
intron_pos 478:0 (11/26)
intron_pos 541:1 (12/26)
intron_pos 560:0 (13/26)
intron_pos 579:0 (14/26)
intron_pos 625:1 (15/26)
intron_pos 659:0 (16/26)
intron_pos 822:2 (17/26)
intron_pos 868:2 (18/26)
intron_pos 913:0 (19/26)
intron_pos 979:1 (20/26)
intron_pos 1007:0 (21/26)
intron_pos 1047:0 (22/26)
intron_pos 1092:1 (23/26)
intron_pos 1121:1 (24/26)
intron_pos 1164:2 (25/26)
intron_pos 1198:0 (26/26)
BEGIN
1 MPPMLNVMAN YNEKTIGKLT MSVFRKFNLG LPEHGQLHFA EWNYNSNYIA CGGALGKLKV
61 VKIGTDATDL NKSPNAATLV VNQALEGHNA TVMNATWNEN NQKLTTSDTS GLIIVWGMFN
121 EQWCEEMINN RNKSVVVSIC WNLEGTKIAI AYADGNVIVG TLEGNRIWNK ELEIQLAACE
181 WAPDGDMLIF GTADGKVSVF DDSGSHFLDI PMHCLEAEDL EQALAKKEHQ KEEIVCLKYW
241 SPTLKSKTIL DEMERDFERK LEKDREVTGT AIFTNFPTKP PPKELPEHEK NTEPYQPVPP
301 DRPRFVVAYA RGMMQLMRSL NDPEPVVVSI PNFKITGAKW SPNGAFLAVC GNDSDKDEPT
361 FSKIHFLSAY GHIVGYFQTN DSCITGICWE STGLRMAIAA AGTLLIGQIR PEFKWGSIEE
421 TIVYVYQKEE LYQYGIMFYD YKTDEKTVKT VTHFENMAFY REHCVLINRQ DDGVIPHYFC
481 QLCNSIGTSL DYNVTTVRPK FACVNGICAV IASEDRYFIW HFVLPKFNSV QAGIHVPGKS
541 GDYVLEEQQR TIEYGTKRLL GSKDEICALC IGDTFFMMAL LSGGIYRVSL NDGVITNSYP
601 VSPSINSIKL NCTFTRLAVI KLVEQVPFQF LLYEFDGDEL KLIYTSDKRD VWDYEWDQNN
661 SNMLALKDKQ KILICDGNSI LEQSSVNGSI LLFQNLVVTA VNIEKILLTP ENPTKTCIVE
721 VMIKAKQDVM NLVNAMKLEE AIDYAERSPH SELWSMIANY AVFKHAFDCA EHAFVKLGDY
781 AGVQLVKKLR NIQSNDLRNA EIYAYRDTLE EAKTAFLQAD RRDLAVEMYK KVGDYASVYD
841 LIRNDDDDEG KCDAFRNMAE THYEMMEWEE AAKAYSYCGD TANQIDCLIR GNLFGELEVL
901 ARTLSDDSEF MEVMGDAFTS RGMCDQAVEC YLRRSLPQKA LHACKELNQW QKAQFIADAN
961 HMENVEGLLG KFAVEMRGES DEKSLSALAL YMRAGRHLDA AKIAFDIAKD RKSKYVPYEE
1021 LKQCYVLGAV LVENHRQTIK ELRKIDKHNF LEDALDDESG LSAEQSRILE NTWRGAEAFH
1081 FMIMAQQHFF ENRIKDALQT SLILSDYEEF LDPAEVHSMI ALAAANVNQF GICSKAMMRL
1141 EAFEEFDDAE KEEMRNLSFR LFSENPPVNP NSAKVACSVC DAKIDPYDLQ CSECQTKFPV
1201 CIASGRLILD NIFWLCPRCK HRAHQHEIPK YNCCPLCHDM ESFRVP
//