LOCUS CCD66918.1 422 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Proton-gated ion channel subunit pbo-6 protein. ACCESSION BX284606-4069 PROTEIN_ID CCD66918.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="pbo-6" /locus_tag="CELE_F11C7.1" /standard_name="F11C7.1" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00017375" /db_xref="EnsemblGenomes-Tr:F11C7.1" /db_xref="WormBase:WBGene00017375" intron_pos 28:1 (1/12) intron_pos 43:2 (2/12) intron_pos 81:0 (3/12) intron_pos 117:2 (4/12) intron_pos 154:1 (5/12) intron_pos 169:0 (6/12) intron_pos 202:0 (7/12) intron_pos 264:0 (8/12) intron_pos 298:1 (9/12) intron_pos 325:0 (10/12) intron_pos 355:0 (11/12) intron_pos 371:0 (12/12) BEGIN 1 MQCSFLTIFI FITTVTVGVA EFSEQYQGSS SRLTRHLLEK HNKCSPPDGR VDISHNIELV 61 HIIGINELNQ NMQVLVYIVQ QWTDASLSWK VEEFRGIKHT WLPEHSIWIP DIIVFNTLEH 121 KMLLEAVRSP IKVSYTGEVT YAYPAIYTVL CQIGIATFPF DDQVCKIRFA SWAYDEDKIL 181 LNASHKPLLK NYSPNEEWAL QDVDMARKEY EHEETVVSEI IYYIKVARKP FYYLISLVVP 241 SYIICVLSIA GLFARFSTKH ERQERFTLGV TAILSMAVLS LVVTEKVPHS SENVPLLIVY 301 MHFIIVMVTI ATILTSTVMR VHAKGFRTHF LSPPNWIRKV LLIARKHANF FQQHGKVYMD 361 IHTTAEQWGE VSRRMDYLLA SVFIIIISTP TLYLFYMCFQ MDHATAERVL LENAKRRDQL 421 YY //